Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JMI entry

There are 3 chains in PDB entry 9JMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 22SER 1198
B
CYS 22SER 1198
C
CYS 22SER 1198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 9JMI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
41 45Right-handed 310
Helix 2
AA2
A
212 219Right-handed alpha
Helix 3
AA3
A
331 341Right-handed alpha
Helix 4
AA4
A
373 378Right-handed 310
Helix 5
AA5
A
400 405Right-handed alpha
Helix 6
AA6
A
419 424Right-handed alpha
Helix 7
AA7
A
438 442Right-handed 310
Helix 8
AA8
A
452 457Right-handed alpha
Helix 9
AA9
A
512 522Right-handed alpha
Helix 10
AB1
A
613 616Right-handed 310
Helix 11
AB2
A
666 672Right-handed alpha
Helix 12
AB3
A
678 686Right-handed alpha
Helix 13
AB4
A
784 791Right-handed alpha
Helix 14
AB5
A
793 801Right-handed alpha
Helix 15
AB6
A
802 804Right-handed 310
Helix 16
AB7
A
805 833Right-handed alpha
Helix 17
AB8
A
850 854Right-handed 310
Helix 18
AB9
A
868 878Right-handed alpha
Helix 19
AC1
A
887 893Right-handed alpha
Helix 20
AC2
A
906 911Right-handed alpha
Helix 21
AC3
A
920 934Right-handed alpha
Helix 22
AC4
A
951 964Right-handed alpha
Helix 23
AC5
A
966 973Right-handed alpha
Helix 24
AC6
A
973 991Right-handed alpha
Helix 25
AC7
A
996 1018Right-handed alpha
Helix 26
AC8
A
1019 1021Right-handed 310
Helix 27
AC9
A
1030 1038Right-handed alpha
Helix 28
AD1
A
1039 1087Right-handed alpha
Helix 29
AD2
A
1173 1175Right-handed 310
Helix 30
AD3
B
97 101Right-handed 310
Helix 31
AD4
B
212 219Right-handed alpha
Helix 32
AD5
B
331 341Right-handed alpha
Helix 33
AD6
B
400 405Right-handed alpha
Helix 34
AD7
B
418 423Right-handed alpha
Helix 35
AD8
B
438 446Right-handed 310
Helix 36
AD9
B
452 457Right-handed alpha
Helix 37
AE1
B
474 481Right-handed alpha
Helix 38
AE2
B
512 522Right-handed alpha
Helix 39
AE3
B
583 588Right-handed 310
Helix 40
AE4
B
673 677Right-handed 310
Helix 41
AE5
B
678 688Right-handed alpha
Helix 42
AE6
B
784 791Right-handed alpha
Helix 43
AE7
B
793 801Right-handed alpha
Helix 44
AE8
B
802 804Right-handed 310
Helix 45
AE9
B
805 833Right-handed alpha
Helix 46
AF1
B
868 878Right-handed alpha
Helix 47
AF2
B
887 894Right-handed alpha
Helix 48
AF3
B
906 911Right-handed alpha
Helix 49
AF4
B
920 934Right-handed alpha
Helix 50
AF5
B
951 962Right-handed alpha
Helix 51
AF6
B
966 973Right-handed alpha
Helix 52
AF7
B
973 992Right-handed alpha
Helix 53
AF8
B
996 1019Right-handed alpha
Helix 54
AF9
B
1030 1038Right-handed alpha
Helix 55
AG1
B
1039 1087Right-handed alpha
Helix 56
AG2
B
1173 1175Right-handed 310
Helix 57
AG3
B
1194 1198Right-handed 310
Helix 58
AG4
C
41 45Right-handed 310
Helix 59
AG5
C
212 219Right-handed alpha
Helix 60
AG6
C
332 341Right-handed alpha
Helix 61
AG7
C
373 379Right-handed 310
Helix 62
AG8
C
400 405Right-handed alpha
Helix 63
AG9
C
418 424Right-handed alpha
Helix 64
AH1
C
438 446Right-handed 310
Helix 65
AH2
C
452 457Right-handed alpha
Helix 66
AH3
C
474 481Right-handed alpha
Helix 67
AH4
C
512 522Right-handed alpha
Helix 68
AH5
C
583 588Right-handed 310
Helix 69
AH6
C
669 673Right-handed 310
Helix 70
AH7
C
678 687Right-handed alpha
Helix 71
AH8
C
784 791Right-handed alpha
Helix 72
AH9
C
793 800Right-handed alpha
Helix 73
AI1
C
801 804Right-handed 310
Helix 74
AI2
C
805 833Right-handed alpha
Helix 75
AI3
C
840 845Right-handed alpha
Helix 76
AI4
C
868 877Right-handed alpha
Helix 77
AI5
C
887 893Right-handed alpha
Helix 78
AI6
C
920 934Right-handed alpha
Helix 79
AI7
C
951 962Right-handed alpha
Helix 80
AI8
C
966 973Right-handed alpha
Helix 81
AI9
C
973 991Right-handed alpha
Helix 82
AJ1
C
997 1018Right-handed alpha
Helix 83
AJ2
C
1030 1038Right-handed alpha
Helix 84
AJ3
C
1041 1087Right-handed alpha
Helix 85
AJ4
C
1173 1175Right-handed 310
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There are 54 sheets in PDB entry 9JMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 67first strand
Strand 2
A
308 316anti-parallel
Strand 3
A
322 327anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
75 78first strand
Strand 2
A
301 306anti-parallel
Strand 3
A
109 113anti-parallel
Strand 4
A
240 247anti-parallel
Strand 5
A
250 255anti-parallel
Strand 6
A
267 272anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
103 104first strand
Strand 2
A
280 283anti-parallel
Strand 3
A
139 142anti-parallel
Strand 4
A
159 166anti-parallel
Strand 5
A
171 181anti-parallel
Strand 6
A
220 223anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
103 104first strand
Strand 2
A
280 283anti-parallel
Strand 3
A
139 142anti-parallel
Strand 4
A
159 166anti-parallel
Strand 5
A
171 181anti-parallel
Strand 6
A
228 232anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
132 133first strand
Strand 2
A
298 299parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
144 147first strand
Strand 2
A
153 157anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
198 200first strand
Strand 2
A
286 288parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
348 349first strand
Strand 2
A
647 652anti-parallel
Strand 3
A
657 662anti-parallel
Strand 4
A
700 701anti-parallel
Strand 5
A
692 693anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 365first strand
Strand 2
A
592 596parallel
Strand 3
A
599 607anti-parallel
Strand 4
A
636 640anti-parallel
Strand 5
A
626 630anti-parallel
Strand 6
A
618 620anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
389 393first strand
Strand 2
A
429 436anti-parallel
Strand 3
A
554 563anti-parallel
Strand 4
A
466 473anti-parallel
Strand 5
A
411 415anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
489 496first strand
Strand 2
A
537 545anti-parallel
Strand 3
A
526 532anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
703 710first strand
Strand 2
A
736 741parallel
Strand 3
A
721 724anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
747 748first strand
Strand 2
B
836 837parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
757 774first strand
Strand 2
A
1114 1131anti-parallel
Strand 3
A
1102 1109anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
781 783first strand
Strand 2
A
912 914anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
836 837first strand
Strand 2
C
747 748parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1135 1136first strand
Strand 2
A
1187 1188parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1143 1146first strand
Strand 2
A
1177 1180anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1149 1153first strand
Strand 2
A
1159 1163anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
26 27first strand
Strand 2
B
94 95parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 67first strand
Strand 2
B
308 316anti-parallel
Strand 3
B
322 327anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
75 77first strand
Strand 2
B
302 306anti-parallel
Strand 3
B
109 113anti-parallel
Strand 4
B
240 247anti-parallel
Strand 5
B
250 255anti-parallel
Strand 6
B
267 272anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
80 81first strand
Strand 2
B
286 288parallel
Strand 3
B
198 200parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
103 104first strand
Strand 2
B
280 283anti-parallel
Strand 3
B
139 142anti-parallel
Strand 4
B
159 166anti-parallel
Strand 5
B
171 181anti-parallel
Strand 6
B
220 223anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
103 104first strand
Strand 2
B
280 283anti-parallel
Strand 3
B
139 142anti-parallel
Strand 4
B
159 166anti-parallel
Strand 5
B
171 181anti-parallel
Strand 6
B
228 232anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
120 121first strand
Strand 2
B
130 133anti-parallel
Strand 3
B
298 299parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
144 147first strand
Strand 2
B
153 157anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
348 349first strand
Strand 2
B
647 652anti-parallel
Strand 3
B
657 663anti-parallel
Strand 4
B
698 701anti-parallel
Strand 5
B
692 694anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
362 365first strand
Strand 2
B
592 596parallel
Strand 3
B
599 607anti-parallel
Strand 4
B
636 640anti-parallel
Strand 5
B
626 630anti-parallel
Strand 6
B
618 620anti-parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
389 393first strand
Strand 2
B
429 436anti-parallel
Strand 3
B
554 563anti-parallel
Strand 4
B
466 473anti-parallel
Strand 5
B
408 415anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
489 496first strand
Strand 2
B
537 545anti-parallel
Strand 3
B
526 532anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
703 710first strand
Strand 2
B
736 741parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
747 748first strand
Strand 2
C
836 837parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
757 774first strand
Strand 2
B
1114 1131anti-parallel
Strand 3
B
1101 1109anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
781 783first strand
Strand 2
B
912 914anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1135 1136first strand
Strand 2
B
1187 1188parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1143 1146first strand
Strand 2
B
1177 1180anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1149 1153first strand
Strand 2
B
1159 1163anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
60 63first strand
Strand 2
C
312 316anti-parallel
Strand 3
C
322 324anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
66 67first strand
Strand 2
C
308 309anti-parallel
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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
75 78first strand
Strand 2
C
301 306anti-parallel
Strand 3
C
109 113anti-parallel
Strand 4
C
240 246anti-parallel
Strand 5
C
251 255anti-parallel
Strand 6
C
267 272anti-parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
80 81first strand
Strand 2
C
286 288parallel
Strand 3
C
198 200parallel
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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
103 104first strand
Strand 2
C
280 283anti-parallel
Strand 3
C
139 147anti-parallel
Strand 4
C
153 166anti-parallel
Strand 5
C
171 181anti-parallel
Strand 6
C
220 232anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 133first strand
Strand 2
C
298 299parallel
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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
348 349first strand
Strand 2
C
647 652anti-parallel
Strand 3
C
657 663anti-parallel
Strand 4
C
698 701anti-parallel
Strand 5
C
692 694anti-parallel
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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
362 365first strand
Strand 2
C
592 596parallel
Strand 3
C
599 607anti-parallel
Strand 4
C
636 640anti-parallel
Strand 5
C
628 630anti-parallel
Strand 6
C
618 619anti-parallel
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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
389 393first strand
Strand 2
C
429 436anti-parallel
Strand 3
C
554 563anti-parallel
Strand 4
C
466 473anti-parallel
Strand 5
C
408 415anti-parallel
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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
489 496first strand
Strand 2
C
538 545anti-parallel
Strand 3
C
526 531anti-parallel
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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
703 710first strand
Strand 2
C
736 741parallel
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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
757 775first strand
Strand 2
C
1113 1131anti-parallel
Strand 3
C
1101 1109anti-parallel
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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
781 783first strand
Strand 2
C
912 914anti-parallel
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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1135 1136first strand
Strand 2
C
1187 1188parallel
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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1143 1146first strand
Strand 2
C
1177 1180anti-parallel
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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1149 1153first strand
Strand 2
C
1159 1163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il