Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JMP entry

There are 3 chains in PDB entry 9JMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 18	THR 1140
B	ASP 18	THR 1140
C	ASP 18	THR 1140

There are 80 helices in PDB entry 9JMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	56	Right-handed 310
Helix 2	AA2	A	226	233	Right-handed alpha
Helix 3	AA3	A	348	356	Right-handed alpha
Helix 4	AA4	A	389	394	Right-handed alpha
Helix 5	AA5	A	399	403	Right-handed 310
Helix 6	AA6	A	414	422	Right-handed alpha
Helix 7	AA7	A	433	440	Right-handed alpha
Helix 8	AA8	A	453	461	Right-handed 310
Helix 9	AA9	A	466	472	Right-handed alpha
Helix 10	AB1	A	528	533	Right-handed 310
Helix 11	AB2	A	682	688	Right-handed alpha
Helix 12	AB3	A	694	699	Right-handed alpha
Helix 13	AB4	A	801	808	Right-handed alpha
Helix 14	AB5	A	810	818	Right-handed alpha
Helix 15	AB6	A	820	848	Right-handed alpha
Helix 16	AB7	A	884	892	Right-handed alpha
Helix 17	AB8	A	903	910	Right-handed alpha
Helix 18	AB9	A	920	924	Right-handed 310
Helix 19	AC1	A	936	950	Right-handed alpha
Helix 20	AC2	A	967	979	Right-handed alpha
Helix 21	AC3	A	982	989	Right-handed alpha
Helix 22	AC4	A	989	1002	Right-handed alpha
Helix 23	AC5	A	1003	1009	Right-handed 310
Helix 24	AC6	A	1012	1035	Right-handed alpha
Helix 25	AC7	A	1036	1038	Right-handed 310
Helix 26	AC8	A	1046	1052	Right-handed alpha
Helix 27	AC9	A	1055	1103	Right-handed alpha
Helix 28	AD1	B	52	56	Right-handed 310
Helix 29	AD2	B	213	218	Right-handed alpha
Helix 30	AD3	B	226	234	Right-handed alpha
Helix 31	AD4	B	346	356	Right-handed alpha
Helix 32	AD5	B	389	394	Right-handed alpha
Helix 33	AD6	B	414	421	Right-handed alpha
Helix 34	AD7	B	433	440	Right-handed alpha
Helix 35	AD8	B	453	457	Right-handed 310
Helix 36	AD9	B	466	472	Right-handed alpha
Helix 37	AE1	B	528	533	Right-handed 310
Helix 38	AE2	B	600	604	Right-handed 310
Helix 39	AE3	B	682	688	Right-handed alpha
Helix 40	AE4	B	801	808	Right-handed alpha
Helix 41	AE5	B	810	818	Right-handed alpha
Helix 42	AE6	B	820	847	Right-handed alpha
Helix 43	AE7	B	884	893	Right-handed alpha
Helix 44	AE8	B	903	911	Right-handed alpha
Helix 45	AE9	B	919	927	Right-handed alpha
Helix 46	AF1	B	936	950	Right-handed alpha
Helix 47	AF2	B	967	979	Right-handed alpha
Helix 48	AF3	B	982	989	Right-handed alpha
Helix 49	AF4	B	989	1003	Right-handed alpha
Helix 50	AF5	B	1004	1008	Right-handed 310
Helix 51	AF6	B	1012	1035	Right-handed alpha
Helix 52	AF7	B	1036	1038	Right-handed 310
Helix 53	AF8	B	1046	1054	Right-handed alpha
Helix 54	AF9	B	1055	1103	Right-handed alpha
Helix 55	AG1	C	52	56	Right-handed 310
Helix 56	AG2	C	213	218	Right-handed alpha
Helix 57	AG3	C	226	235	Right-handed alpha
Helix 58	AG4	C	348	356	Right-handed alpha
Helix 59	AG5	C	389	394	Right-handed alpha
Helix 60	AG6	C	414	422	Right-handed alpha
Helix 61	AG7	C	433	440	Right-handed alpha
Helix 62	AG8	C	456	461	Right-handed 310
Helix 63	AG9	C	466	472	Right-handed alpha
Helix 64	AH1	C	528	533	Right-handed 310
Helix 65	AH2	C	682	688	Right-handed alpha
Helix 66	AH3	C	801	806	Right-handed alpha
Helix 67	AH4	C	810	818	Right-handed alpha
Helix 68	AH5	C	820	846	Right-handed alpha
Helix 69	AH6	C	884	894	Right-handed alpha
Helix 70	AH7	C	903	910	Right-handed alpha
Helix 71	AH8	C	922	927	Right-handed alpha
Helix 72	AH9	C	941	951	Right-handed alpha
Helix 73	AI1	C	967	978	Right-handed alpha
Helix 74	AI2	C	982	989	Right-handed alpha
Helix 75	AI3	C	989	1003	Right-handed alpha
Helix 76	AI4	C	1004	1006	Right-handed 310
Helix 77	AI5	C	1012	1035	Right-handed alpha
Helix 78	AI6	C	1036	1038	Right-handed 310
Helix 79	AI7	C	1046	1054	Right-handed alpha
Helix 80	AI8	C	1055	1103	Right-handed alpha

There are 51 sheets in PDB entry 9JMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	36	first strand
Strand 2	A	105	108	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	C	634	636	parallel
Strand 3	C	642	646	anti-parallel
Strand 4	C	652	656	anti-parallel
Strand 5	C	615	623	anti-parallel
Strand 6	C	607	612	anti-parallel
Strand 7	C	377	380	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	78	first strand
Strand 2	A	323	331	anti-parallel
Strand 3	A	337	342	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	316	321	anti-parallel
Strand 3	A	120	125	anti-parallel
Strand 4	A	256	263	anti-parallel
Strand 5	A	266	271	anti-parallel
Strand 6	A	283	288	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	296	300	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	171	178	anti-parallel
Strand 5	A	183	193	anti-parallel
Strand 6	A	236	239	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	296	300	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	171	178	anti-parallel
Strand 5	A	183	193	anti-parallel
Strand 6	A	244	248	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	141	145	anti-parallel
Strand 3	A	313	314	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	165	169	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	302	304	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	664	668	anti-parallel
Strand 3	A	673	679	anti-parallel
Strand 4	A	717	720	anti-parallel
Strand 5	A	712	714	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	380	first strand
Strand 2	A	607	612	parallel
Strand 3	A	615	623	anti-parallel
Strand 4	A	652	656	anti-parallel
Strand 5	A	642	646	anti-parallel
Strand 6	A	634	636	anti-parallel
Strand 7	B	66	67	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	411	413	parallel
Strand 3	A	589	590	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	408	first strand
Strand 2	A	444	451	anti-parallel
Strand 3	A	572	580	anti-parallel
Strand 4	A	481	487	anti-parallel
Strand 5	A	423	429	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	519	first strand
Strand 2	A	499	510	anti-parallel
Strand 3	A	557	566	anti-parallel
Strand 4	A	543	548	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	729	first strand
Strand 2	A	754	758	parallel
Strand 3	A	740	743	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	792	first strand
Strand 2	A	1129	1137	anti-parallel
Strand 3	A	1117	1125	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	800	first strand
Strand 2	A	928	930	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	862	first strand
Strand 2	A	865	866	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	105	106	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	78	first strand
Strand 2	B	323	331	anti-parallel
Strand 3	B	337	342	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	316	321	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	256	263	anti-parallel
Strand 5	B	266	271	anti-parallel
Strand 6	B	283	288	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	296	300	anti-parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	171	178	anti-parallel
Strand 5	B	183	193	anti-parallel
Strand 6	B	236	239	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	296	300	anti-parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	171	178	anti-parallel
Strand 5	B	183	193	anti-parallel
Strand 6	B	244	248	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	141	145	anti-parallel
Strand 3	B	313	314	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	165	168	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	212	first strand
Strand 2	B	302	304	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	664	668	anti-parallel
Strand 3	B	673	679	anti-parallel
Strand 4	B	717	720	anti-parallel
Strand 5	B	711	714	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	607	612	parallel
Strand 3	B	615	623	anti-parallel
Strand 4	B	652	656	anti-parallel
Strand 5	B	642	646	anti-parallel
Strand 6	B	634	636	anti-parallel
Strand 7	C	66	67	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	411	413	parallel
Strand 3	B	589	590	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	408	first strand
Strand 2	B	444	451	anti-parallel
Strand 3	B	572	580	anti-parallel
Strand 4	B	481	487	anti-parallel
Strand 5	B	423	430	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	519	first strand
Strand 2	B	499	509	anti-parallel
Strand 3	B	557	566	anti-parallel
Strand 4	B	543	548	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	729	first strand
Strand 2	B	753	758	parallel
Strand 3	B	741	744	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	783	792	first strand
Strand 2	B	1129	1138	anti-parallel
Strand 3	B	1117	1125	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	800	first strand
Strand 2	B	928	931	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	861	862	first strand
Strand 2	B	865	866	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	36	first strand
Strand 2	C	105	108	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	78	first strand
Strand 2	C	323	331	anti-parallel
Strand 3	C	337	342	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	316	321	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	256	263	anti-parallel
Strand 5	C	266	271	anti-parallel
Strand 6	C	283	288	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	296	300	anti-parallel
Strand 3	C	150	154	anti-parallel
Strand 4	C	171	178	anti-parallel
Strand 5	C	183	193	anti-parallel
Strand 6	C	236	239	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	296	300	anti-parallel
Strand 3	C	150	154	anti-parallel
Strand 4	C	171	178	anti-parallel
Strand 5	C	183	193	anti-parallel
Strand 6	C	244	248	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	141	145	anti-parallel
Strand 3	C	313	314	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	165	169	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	212	first strand
Strand 2	C	302	304	parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	664	668	anti-parallel
Strand 3	C	673	679	anti-parallel
Strand 4	C	717	720	anti-parallel
Strand 5	C	712	714	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	386	first strand
Strand 2	C	411	412	parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	408	first strand
Strand 2	C	444	451	anti-parallel
Strand 3	C	572	580	anti-parallel
Strand 4	C	481	487	anti-parallel
Strand 5	C	423	424	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	519	first strand
Strand 2	C	499	509	anti-parallel
Strand 3	C	557	566	anti-parallel
Strand 4	C	543	548	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	728	729	first strand
Strand 2	C	754	758	parallel
Strand 3	C	740	743	anti-parallel
Strand 4	C	734	735	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	781	792	first strand
Strand 2	C	1129	1140	anti-parallel
Strand 3	C	1117	1126	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	800	first strand
Strand 2	C	928	930	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	861	862	first strand
Strand 2	C	865	866	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMP