Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JMS entry

There are 5 chains in PDB entry 9JMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 115	GLN 736
B	THR 115	GLN 736
C	THR 115	GLN 736
H	GLU 1	SER 122
L	GLN 1	ARG 107

There are 43 helices in PDB entry 9JMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	199	206	Right-handed alpha
Helix 2	AA2	A	231	233	Right-handed 310
Helix 3	AA3	A	312	316	Right-handed 310
Helix 4	AA4	A	363	367	Right-handed 310
Helix 5	AA5	A	408	412	Right-handed 310
Helix 6	AA6	A	417	433	Right-handed alpha
Helix 7	AA7	A	512	554	Right-handed alpha
Helix 8	AA8	A	557	567	Right-handed alpha
Helix 9	AA9	A	702	707	Right-handed alpha
Helix 10	AB1	A	713	722	Right-handed alpha
Helix 11	AB2	A	723	729	Right-handed alpha
Helix 12	AB3	B	199	204	Right-handed alpha
Helix 13	AB4	B	206	211	Right-handed alpha
Helix 14	AB5	B	231	233	Right-handed 310
Helix 15	AB6	B	312	316	Right-handed 310
Helix 16	AB7	B	321	323	Right-handed 310
Helix 17	AB8	B	363	367	Right-handed 310
Helix 18	AB9	B	408	412	Right-handed 310
Helix 19	AC1	B	416	433	Right-handed alpha
Helix 20	AC2	B	512	554	Right-handed alpha
Helix 21	AC3	B	557	567	Right-handed alpha
Helix 22	AC4	B	672	676	Right-handed 310
Helix 23	AC5	B	702	707	Right-handed alpha
Helix 24	AC6	B	713	722	Right-handed alpha
Helix 25	AC7	B	723	729	Right-handed alpha
Helix 26	AC8	C	199	206	Right-handed alpha
Helix 27	AC9	C	206	211	Right-handed alpha
Helix 28	AD1	C	231	233	Right-handed 310
Helix 29	AD2	C	312	316	Right-handed 310
Helix 30	AD3	C	321	323	Right-handed 310
Helix 31	AD4	C	363	367	Right-handed 310
Helix 32	AD5	C	408	412	Right-handed 310
Helix 33	AD6	C	417	433	Right-handed alpha
Helix 34	AD7	C	512	554	Right-handed alpha
Helix 35	AD8	C	557	567	Right-handed alpha
Helix 36	AD9	C	674	676	Right-handed 310
Helix 37	AE1	C	702	707	Right-handed alpha
Helix 38	AE2	C	713	722	Right-handed alpha
Helix 39	AE3	C	723	729	Right-handed alpha
Helix 40	AE4	H	28	32	Right-handed 310
Helix 41	AE5	H	62	65	Right-handed 310
Helix 42	AE6	H	87	90	Right-handed 310
Helix 43	AE7	L	78	82	Right-handed 310

There are 44 sheets in PDB entry 9JMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	A	579	580	anti-parallel
Strand 3	A	130	133	anti-parallel
Strand 4	B	677	679	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	403	first strand
Strand 2	A	388	393	anti-parallel
Strand 3	A	371	382	anti-parallel
Strand 4	A	149	158	anti-parallel
Strand 5	A	453	462	anti-parallel
Strand 6	A	438	440	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	403	first strand
Strand 2	A	388	393	anti-parallel
Strand 3	A	371	382	anti-parallel
Strand 4	A	149	158	anti-parallel
Strand 5	A	453	462	anti-parallel
Strand 6	A	445	449	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	197	first strand
Strand 2	A	163	181	anti-parallel
Strand 3	A	272	275	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	252	254	anti-parallel
Strand 3	A	278	286	anti-parallel
Strand 4	A	163	181	anti-parallel
Strand 5	A	356	358	anti-parallel
Strand 6	A	340	351	anti-parallel
Strand 7	A	325	335	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	237	239	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	221	first strand
Strand 2	A	224	229	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	300	301	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	595	first strand
Strand 2	A	614	615	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	609	first strand
Strand 2	A	642	644	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	629	first strand
Strand 2	A	635	636	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	655	first strand
Strand 2	A	658	663	anti-parallel
Strand 3	A	667	672	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	679	first strand
Strand 2	C	130	133	parallel
Strand 3	C	579	580	anti-parallel
Strand 4	C	573	574	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	574	first strand
Strand 2	B	579	580	anti-parallel
Strand 3	B	130	133	anti-parallel
Strand 4	C	677	679	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	403	first strand
Strand 2	B	388	393	anti-parallel
Strand 3	B	371	382	anti-parallel
Strand 4	B	149	158	anti-parallel
Strand 5	B	453	462	anti-parallel
Strand 6	B	438	440	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	403	first strand
Strand 2	B	388	393	anti-parallel
Strand 3	B	371	382	anti-parallel
Strand 4	B	149	158	anti-parallel
Strand 5	B	453	462	anti-parallel
Strand 6	B	445	449	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	197	first strand
Strand 2	B	163	181	anti-parallel
Strand 3	B	269	286	anti-parallel
Strand 4	B	252	254	anti-parallel
Strand 5	B	241	242	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	197	first strand
Strand 2	B	163	181	anti-parallel
Strand 3	B	356	360	anti-parallel
Strand 4	B	345	351	anti-parallel
Strand 5	B	325	331	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	238	239	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	221	first strand
Strand 2	B	224	229	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	300	301	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	335	first strand
Strand 2	B	340	341	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	595	first strand
Strand 2	B	613	615	anti-parallel
Strand 3	B	626	629	anti-parallel
Strand 4	B	635	636	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	609	first strand
Strand 2	B	642	644	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	655	first strand
Strand 2	B	658	663	anti-parallel
Strand 3	B	666	669	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	586	587	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	403	first strand
Strand 2	C	388	393	anti-parallel
Strand 3	C	371	382	anti-parallel
Strand 4	C	149	158	anti-parallel
Strand 5	C	453	462	anti-parallel
Strand 6	C	438	440	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	403	first strand
Strand 2	C	388	393	anti-parallel
Strand 3	C	371	382	anti-parallel
Strand 4	C	149	158	anti-parallel
Strand 5	C	453	462	anti-parallel
Strand 6	C	445	449	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	197	first strand
Strand 2	C	163	181	anti-parallel
Strand 3	C	269	286	anti-parallel
Strand 4	C	252	254	anti-parallel
Strand 5	C	241	242	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	197	first strand
Strand 2	C	163	181	anti-parallel
Strand 3	C	356	358	anti-parallel
Strand 4	C	345	351	anti-parallel
Strand 5	C	325	331	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	237	239	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	221	first strand
Strand 2	C	224	229	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	300	301	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	335	first strand
Strand 2	C	340	341	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	595	first strand
Strand 2	C	614	615	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	607	609	first strand
Strand 2	C	642	644	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	629	first strand
Strand 2	C	635	636	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	655	first strand
Strand 2	C	658	663	anti-parallel
Strand 3	C	666	672	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	117	120	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	40	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	117	120	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	111	112	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	21	25	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	61	66	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	12	first strand
Strand 2	L	103	104	parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	53	first strand
Strand 2	L	44	48	anti-parallel
Strand 3	L	33	36	anti-parallel
Strand 4	L	86	89	anti-parallel
Strand 5	L	96	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMS