Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JMY entry

There are 2 chains in PDB entry 9JMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 285
B
 THR 2LYS 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9JMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
33 36Right-handed 310
Helix 3
AA3
A
37 43Right-handed alpha
Helix 4
AA4
A
50 57Right-handed alpha
Helix 5
AA5
A
67 76Right-handed alpha
Helix 6
AA6
A
78 83Right-handed 310
Helix 7
AA7
A
94 108Right-handed alpha
Helix 8
AA8
A
120 124Right-handed 310
Helix 9
AA9
A
136 148Right-handed alpha
Helix 10
AB1
A
149 151Right-handed 310
Helix 11
AB2
A
160 191Right-handed alpha
Helix 12
AB3
A
194 197Right-handed 310
Helix 13
AB4
A
198 212Right-handed alpha
Helix 14
AB5
A
212 223Right-handed alpha
Helix 15
AB6
A
231 250Right-handed alpha
Helix 16
AB7
A
253 269Right-handed alpha
Helix 17
AB8
A
275 278Right-handed 310
Helix 18
AB9
A
279 284Right-handed alpha
Helix 19
AC1
B
10 23Right-handed alpha
Helix 20
AC2
B
33 36Right-handed 310
Helix 21
AC3
B
37 43Right-handed alpha
Helix 22
AC4
B
50 57Right-handed alpha
Helix 23
AC5
B
68 76Right-handed alpha
Helix 24
AC6
B
78 83Right-handed 310
Helix 25
AC7
B
94 108Right-handed alpha
Helix 26
AC8
B
120 124Right-handed 310
Helix 27
AC9
B
136 148Right-handed alpha
Helix 28
AD1
B
160 191Right-handed alpha
Helix 29
AD2
B
194 212Right-handed alpha
Helix 30
AD3
B
212 223Right-handed alpha
Helix 31
AD4
B
231 250Right-handed alpha
Helix 32
AD5
B
253 269Right-handed alpha
Helix 33
AD6
B
275 278Right-handed 310
Helix 34
AD7
B
279 284Right-handed alpha
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There are 2 sheets in PDB entry 9JMY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
26 30parallel
Strand 3
A
3 7parallel
Strand 4
A
60 63parallel
Strand 5
A
86 89parallel
Strand 6
A
111 117parallel
Strand 7
A
130 134anti-parallel
Strand 8
A
152 155parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
26 30parallel
Strand 3
B
3 7parallel
Strand 4
B
60 63parallel
Strand 5
B
86 89parallel
Strand 6
B
111 117parallel
Strand 7
B
130 134anti-parallel
Strand 8
B
152 155parallel
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