Analysis of interatomic Contacts of Structural Units in PDB entry:
9JN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JN1 entry

There is 1 chain in PDB entry 9JN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 1516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9JN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
12 17Right-handed alpha
Helix 3
AA3
A
24 30Right-handed alpha
Helix 4
AA4
A
30 54Right-handed alpha
Helix 5
AA5
A
62 89Right-handed alpha
Helix 6
AA6
A
97 122Right-handed alpha
Helix 7
AA7
A
129 157Right-handed alpha
Helix 8
AA8
A
161 184Right-handed alpha
Helix 9
AA9
A
199 206Right-handed alpha
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
230 233Right-handed 310
Helix 12
AB3
A
234 256Right-handed alpha
Helix 13
AB4
A
309 318Right-handed alpha
Helix 14
AB5
A
318 337Right-handed alpha
Helix 15
AB6
A
337 352Right-handed alpha
Helix 16
AB7
A
356 407Right-handed alpha
Helix 17
AB8
A
408 415Right-handed alpha
Helix 18
AB9
A
416 426Right-handed alpha
Helix 19
AC1
A
426 437Right-handed alpha
Helix 20
AC2
A
439 459Right-handed alpha
Helix 21
AC3
A
461 507Right-handed alpha
Helix 22
AC4
A
508 515Right-handed alpha
Helix 23
AC5
A
517 569Right-handed alpha
Helix 24
AC6
A
575 618Right-handed alpha
Helix 25
AC7
A
676 685Right-handed alpha
Helix 26
AC8
A
715 721Right-handed alpha
Helix 27
AC9
A
726 737Right-handed alpha
Helix 28
AD1
A
738 746Right-handed alpha
Helix 29
AD2
A
748 751Right-handed 310
Helix 30
AD3
A
762 778Right-handed alpha
Helix 31
AD4
A
792 804Right-handed alpha
Helix 32
AD5
A
844 851Right-handed alpha
Helix 33
AD6
A
853 862Right-handed alpha
Helix 34
AD7
A
890 896Right-handed 310
Helix 35
AD8
A
897 914Right-handed alpha
Helix 36
AD9
A
964 974Right-handed alpha
Helix 37
AE1
A
975 1010Right-handed alpha
Helix 38
AE2
A
1016 1066Right-handed alpha
Helix 39
AE3
A
1068 1075Right-handed alpha
Helix 40
AE4
A
1076 1093Right-handed alpha
Helix 41
AE5
A
1093 1120Right-handed alpha
Helix 42
AE6
A
1123 1169Right-handed alpha
Helix 43
AE7
A
1169 1176Right-handed alpha
Helix 44
AE8
A
1178 1229Right-handed alpha
Helix 45
AE9
A
1234 1247Right-handed alpha
Helix 46
AF1
A
1247 1277Right-handed alpha
Helix 47
AF2
A
1292 1297Right-handed alpha
Helix 48
AF3
A
1339 1348Right-handed alpha
Helix 49
AF4
A
1369 1376Right-handed alpha
Helix 50
AF5
A
1390 1396Right-handed alpha
Helix 51
AF6
A
1402 1414Right-handed alpha
Helix 52
AF7
A
1415 1422Right-handed alpha
Helix 53
AF8
A
1424 1428Right-handed 310
Helix 54
AF9
A
1431 1435Right-handed 310
Helix 55
AG1
A
1438 1454Right-handed alpha
Helix 56
AG2
A
1468 1483Right-handed alpha
Helix 57
AG3
A
1494 1501Right-handed alpha
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There are 6 sheets in PDB entry 9JN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 629first strand
Strand 2
A
689 697parallel
Strand 3
A
637 645anti-parallel
Strand 4
A
654 661anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 704first strand
Strand 2
A
781 785parallel
Strand 3
A
814 818parallel
Strand 4
A
666 670parallel
Strand 5
A
830 835parallel
Strand 6
A
838 843anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
713 714first strand
Strand 2
A
753 754anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1323 1324first strand
Strand 2
A
1300 1303anti-parallel
Strand 3
A
1357 1360anti-parallel
Strand 4
A
1363 1364anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1305 1307first strand
Strand 2
A
1317 1320anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1377 1380first strand
Strand 2
A
1457 1460parallel
Strand 3
A
1488 1490parallel
Strand 4
A
1330 1333parallel
Strand 5
A
1503 1508parallel
Strand 6
A
1511 1516anti-parallel
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