Analysis of interatomic Contacts of Structural Units in PDB entry:
9JN2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JN2 entry

There is 1 chain in PDB entry 9JN2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 1537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 61 helices in PDB entry 9JN2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
12 18Right-handed alpha
Helix 3
AA3
A
24 55Right-handed alpha
Helix 4
AA4
A
62 89Right-handed alpha
Helix 5
AA5
A
97 121Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
134 157Right-handed alpha
Helix 8
AA8
A
161 184Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
199 206Right-handed alpha
Helix 11
AB2
A
209 219Right-handed alpha
Helix 12
AB3
A
222 226Right-handed 310
Helix 13
AB4
A
230 233Right-handed 310
Helix 14
AB5
A
234 267Right-handed alpha
Helix 15
AB6
A
308 318Right-handed alpha
Helix 16
AB7
A
318 337Right-handed alpha
Helix 17
AB8
A
337 349Right-handed alpha
Helix 18
AB9
A
356 405Right-handed alpha
Helix 19
AC1
A
408 415Right-handed alpha
Helix 20
AC2
A
416 426Right-handed alpha
Helix 21
AC3
A
426 437Right-handed alpha
Helix 22
AC4
A
439 460Right-handed alpha
Helix 23
AC5
A
462 508Right-handed alpha
Helix 24
AC6
A
508 515Right-handed alpha
Helix 25
AC7
A
517 569Right-handed alpha
Helix 26
AC8
A
575 618Right-handed alpha
Helix 27
AC9
A
676 686Right-handed alpha
Helix 28
AD1
A
714 721Right-handed alpha
Helix 29
AD2
A
726 737Right-handed alpha
Helix 30
AD3
A
738 746Right-handed alpha
Helix 31
AD4
A
748 752Right-handed 310
Helix 32
AD5
A
762 778Right-handed alpha
Helix 33
AD6
A
792 803Right-handed alpha
Helix 34
AD7
A
844 852Right-handed alpha
Helix 35
AD8
A
854 861Right-handed alpha
Helix 36
AD9
A
963 975Right-handed alpha
Helix 37
AE1
A
975 1005Right-handed alpha
Helix 38
AE2
A
1005 1011Right-handed alpha
Helix 39
AE3
A
1016 1066Right-handed alpha
Helix 40
AE4
A
1068 1075Right-handed alpha
Helix 41
AE5
A
1076 1093Right-handed alpha
Helix 42
AE6
A
1093 1120Right-handed alpha
Helix 43
AE7
A
1122 1169Right-handed alpha
Helix 44
AE8
A
1169 1176Right-handed alpha
Helix 45
AE9
A
1178 1229Right-handed alpha
Helix 46
AF1
A
1234 1246Right-handed alpha
Helix 47
AF2
A
1247 1266Right-handed alpha
Helix 48
AF3
A
1266 1277Right-handed alpha
Helix 49
AF4
A
1339 1348Right-handed alpha
Helix 50
AF5
A
1370 1375Right-handed alpha
Helix 51
AF6
A
1391 1396Right-handed alpha
Helix 52
AF7
A
1402 1413Right-handed alpha
Helix 53
AF8
A
1415 1422Right-handed alpha
Helix 54
AF9
A
1424 1427Right-handed 310
Helix 55
AG1
A
1431 1435Right-handed 310
Helix 56
AG2
A
1438 1454Right-handed alpha
Helix 57
AG3
A
1462 1467Right-handed alpha
Helix 58
AG4
A
1468 1483Right-handed alpha
Helix 59
AG5
A
1494 1501Right-handed alpha
Helix 60
AG6
A
1517 1524Right-handed alpha
Helix 61
AG7
A
1526 1536Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9JN2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 629first strand
Strand 2
A
689 697parallel
Strand 3
A
637 645anti-parallel
Strand 4
A
654 657anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 629first strand
Strand 2
A
689 697parallel
Strand 3
A
637 645anti-parallel
Strand 4
A
660 661anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 704first strand
Strand 2
A
781 785parallel
Strand 3
A
814 818parallel
Strand 4
A
666 670parallel
Strand 5
A
830 835parallel
Strand 6
A
838 843anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1301 1307first strand
Strand 2
A
1317 1323anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1458 1461first strand
Strand 2
A
1488 1491parallel
Strand 3
A
1330 1332parallel
Strand 4
A
1503 1508parallel
Strand 5
A
1511 1516anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1389 1390first strand
Strand 2
A
1429 1430anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il