Analysis of interatomic Contacts of Structural Units in PDB entry:
9JN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JN5 entry

There are 4 chains in PDB entry 9JN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 211
B
 ALA 0PRO 211
C
 GLY -1PRO 211
D
 GLY -1PRO 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9JN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
12 22Right-handed alpha
Helix 3
AA3
A
31 35Right-handed 310
Helix 4
AA4
A
70 77Right-handed alpha
Helix 5
AA5
A
94 99Right-handed alpha
Helix 6
AA6
A
123 143Right-handed alpha
Helix 7
AA7
A
148 150Right-handed 310
Helix 8
AA8
A
151 159Right-handed alpha
Helix 9
AA9
A
183 196Right-handed alpha
Helix 10
AB1
A
197 209Right-handed alpha
Helix 11
AB2
B
4 8Right-handed 310
Helix 12
AB3
B
12 22Right-handed alpha
Helix 13
AB4
B
31 35Right-handed 310
Helix 14
AB5
B
70 76Right-handed alpha
Helix 15
AB6
B
94 99Right-handed alpha
Helix 16
AB7
B
123 143Right-handed alpha
Helix 17
AB8
B
148 150Right-handed 310
Helix 18
AB9
B
151 159Right-handed alpha
Helix 19
AC1
B
183 195Right-handed alpha
Helix 20
AC2
B
197 209Right-handed alpha
Helix 21
AC3
C
4 8Right-handed 310
Helix 22
AC4
C
12 22Right-handed alpha
Helix 23
AC5
C
70 76Right-handed alpha
Helix 24
AC6
C
94 99Right-handed alpha
Helix 25
AC7
C
123 143Right-handed alpha
Helix 26
AC8
C
147 150Right-handed 310
Helix 27
AC9
C
151 159Right-handed alpha
Helix 28
AD1
C
183 195Right-handed alpha
Helix 29
AD2
C
197 210Right-handed alpha
Helix 30
AD3
D
4 8Right-handed 310
Helix 31
AD4
D
12 22Right-handed alpha
Helix 32
AD5
D
70 76Right-handed alpha
Helix 33
AD6
D
94 99Right-handed alpha
Helix 34
AD7
D
123 143Right-handed alpha
Helix 35
AD8
D
147 150Right-handed 310
Helix 36
AD9
D
151 158Right-handed alpha
Helix 37
AE1
D
183 195Right-handed alpha
Helix 38
AE2
D
197 210Right-handed alpha
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There are 4 sheets in PDB entry 9JN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 177first strand
Strand 2
A
106 120anti-parallel
Strand 3
A
162 168anti-parallel
Strand 4
A
61 67anti-parallel
Strand 5
A
38 46anti-parallel
Strand 6
A
24 29anti-parallel
Strand 7
A
80 93anti-parallel
Strand 8
A
106 120anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 93first strand
Strand 2
B
171 177first strand
Strand 3
B
80 87first strand
Strand 4
B
24 29anti-parallel
Strand 5
B
38 46anti-parallel
Strand 6
B
61 67anti-parallel
Strand 7
B
162 168anti-parallel
Strand 8
B
106 120anti-parallel
Strand 9
B
171 177anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 177first strand
Strand 2
C
106 121anti-parallel
Strand 3
C
162 168anti-parallel
Strand 4
C
61 67anti-parallel
Strand 5
C
38 46anti-parallel
Strand 6
C
24 29anti-parallel
Strand 7
C
81 93anti-parallel
Strand 8
C
106 121anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 177first strand
Strand 2
D
106 121anti-parallel
Strand 3
D
162 168anti-parallel
Strand 4
D
61 67anti-parallel
Strand 5
D
38 46anti-parallel
Strand 6
D
24 29anti-parallel
Strand 7
D
80 93anti-parallel
Strand 8
D
106 121anti-parallel
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