Analysis of interatomic Contacts of Structural Units in PDB entry:
9JN9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JN9 entry

There are 2 chains in PDB entry 9JN9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	GLU 907
B	GLU 9	GLU 907

There are 64 helices in PDB entry 9JN9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	32	Right-handed alpha
Helix 2	AA2	A	34	56	Right-handed alpha
Helix 3	AA3	A	70	75	Right-handed alpha
Helix 4	AA4	A	78	88	Right-handed alpha
Helix 5	AA5	A	142	160	Right-handed alpha
Helix 6	AA6	A	181	187	Right-handed alpha
Helix 7	AA7	A	187	192	Right-handed alpha
Helix 8	AA8	A	220	238	Right-handed alpha
Helix 9	AA9	A	267	275	Right-handed alpha
Helix 10	AB1	A	341	349	Right-handed alpha
Helix 11	AB2	A	382	395	Right-handed alpha
Helix 12	AB3	A	406	417	Right-handed alpha
Helix 13	AB4	A	424	429	Right-handed alpha
Helix 14	AB5	A	441	447	Right-handed alpha
Helix 15	AB6	A	478	492	Right-handed alpha
Helix 16	AB7	A	492	497	Right-handed alpha
Helix 17	AB8	A	537	553	Right-handed alpha
Helix 18	AB9	A	557	581	Right-handed alpha
Helix 19	AC1	A	582	584	Right-handed 310
Helix 20	AC2	A	598	603	Right-handed alpha
Helix 21	AC3	A	604	615	Right-handed alpha
Helix 22	AC4	A	627	632	Right-handed alpha
Helix 23	AC5	A	644	649	Right-handed alpha
Helix 24	AC6	A	674	682	Right-handed alpha
Helix 25	AC7	A	704	708	Right-handed 310
Helix 26	AC8	A	737	750	Right-handed alpha
Helix 27	AC9	A	758	764	Right-handed 310
Helix 28	AD1	A	793	798	Right-handed alpha
Helix 29	AD2	A	799	804	Right-handed alpha
Helix 30	AD3	A	824	829	Right-handed alpha
Helix 31	AD4	A	832	837	Right-handed alpha
Helix 32	AD5	A	889	894	Right-handed 310
Helix 33	AD6	B	25	32	Right-handed alpha
Helix 34	AD7	B	34	56	Right-handed alpha
Helix 35	AD8	B	70	75	Right-handed alpha
Helix 36	AD9	B	78	88	Right-handed alpha
Helix 37	AE1	B	142	160	Right-handed alpha
Helix 38	AE2	B	183	185	Right-handed 310
Helix 39	AE3	B	186	192	Right-handed alpha
Helix 40	AE4	B	220	238	Right-handed alpha
Helix 41	AE5	B	267	275	Right-handed alpha
Helix 42	AE6	B	341	349	Right-handed alpha
Helix 43	AE7	B	382	395	Right-handed alpha
Helix 44	AE8	B	406	417	Right-handed alpha
Helix 45	AE9	B	423	429	Right-handed alpha
Helix 46	AF1	B	441	447	Right-handed alpha
Helix 47	AF2	B	477	492	Right-handed alpha
Helix 48	AF3	B	492	497	Right-handed alpha
Helix 49	AF4	B	537	553	Right-handed alpha
Helix 50	AF5	B	558	584	Right-handed alpha
Helix 51	AF6	B	598	615	Right-handed alpha
Helix 52	AF7	B	627	632	Right-handed alpha
Helix 53	AF8	B	644	649	Right-handed alpha
Helix 54	AF9	B	674	682	Right-handed alpha
Helix 55	AG1	B	704	708	Right-handed 310
Helix 56	AG2	B	735	750	Right-handed alpha
Helix 57	AG3	B	758	763	Right-handed 310
Helix 58	AG4	B	772	778	Right-handed alpha
Helix 59	AG5	B	792	796	Right-handed 310
Helix 60	AG6	B	799	803	Right-handed 310
Helix 61	AG7	B	805	809	Right-handed 310
Helix 62	AG8	B	821	825	Right-handed 310
Helix 63	AG9	B	832	841	Right-handed alpha
Helix 64	AH1	B	890	895	Right-handed alpha

There are 17 sheets in PDB entry 9JN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	105	108	anti-parallel
Strand 3	A	97	100	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	138	140	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	245	first strand
Strand 2	A	308	312	anti-parallel
Strand 3	A	295	298	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	434	439	parallel
Strand 3	A	454	462	anti-parallel
Strand 4	A	472	473	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	434	439	parallel
Strand 3	A	454	462	anti-parallel
Strand 4	A	467	469	anti-parallel
Strand 5	A	508	510	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	660	first strand
Strand 2	A	699	703	parallel
Strand 3	A	588	592	parallel
Strand 4	A	725	727	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	624	first strand
Strand 2	A	641	643	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	735	first strand
Strand 2	A	778	779	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	784	first strand
Strand 2	A	898	903	parallel
Strand 3	A	873	876	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	819	first strand
Strand 2	A	861	864	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	105	108	anti-parallel
Strand 3	B	97	100	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	138	139	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	245	first strand
Strand 2	B	309	312	anti-parallel
Strand 3	B	295	297	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	434	439	parallel
Strand 3	B	454	462	anti-parallel
Strand 4	B	467	473	anti-parallel
Strand 5	B	508	510	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	660	first strand
Strand 2	B	699	703	parallel
Strand 3	B	588	592	parallel
Strand 4	B	725	727	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	622	624	first strand
Strand 2	B	641	643	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	784	first strand
Strand 2	B	898	903	parallel
Strand 3	B	873	876	parallel
Strand 4	B	815	819	parallel
Strand 5	B	861	864	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JN9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JN9