Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JNK entry

There are 6 chains in PDB entry 9JNK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 392	GLY 664
C	MET 1	LYS 442
B	ALA 392	GLY 664
D	MET 1	LYS 442
E	T 1	T 25
F	A 1	A 25

There are 61 helices in PDB entry 9JNK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	418	427	Right-handed alpha
Helix 2	AA2	A	448	453	Right-handed alpha
Helix 3	AA3	A	455	466	Right-handed alpha
Helix 4	AA4	A	509	515	Right-handed alpha
Helix 5	AA5	A	523	527	Right-handed 310
Helix 6	AA6	A	528	535	Right-handed alpha
Helix 7	AA7	A	557	561	Right-handed 310
Helix 8	AA8	A	566	575	Right-handed alpha
Helix 9	AA9	A	577	583	Right-handed alpha
Helix 10	AB1	A	607	615	Right-handed alpha
Helix 11	AB2	A	628	632	Right-handed 310
Helix 12	AB3	A	633	643	Right-handed alpha
Helix 13	AB4	A	654	659	Right-handed alpha
Helix 14	AB5	C	8	22	Right-handed alpha
Helix 15	AB6	C	37	51	Right-handed alpha
Helix 16	AB7	C	61	67	Right-handed alpha
Helix 17	AB8	C	68	72	Right-handed 310
Helix 18	AB9	C	76	88	Right-handed alpha
Helix 19	AC1	C	123	130	Right-handed alpha
Helix 20	AC2	C	132	136	Right-handed 310
Helix 21	AC3	C	155	160	Right-handed alpha
Helix 22	AC4	C	177	191	Right-handed alpha
Helix 23	AC5	C	239	247	Right-handed alpha
Helix 24	AC6	C	247	254	Right-handed alpha
Helix 25	AC7	C	283	295	Right-handed alpha
Helix 26	AC8	C	319	365	Right-handed alpha
Helix 27	AC9	C	374	385	Right-handed alpha
Helix 28	AD1	C	391	396	Right-handed alpha
Helix 29	AD2	C	399	404	Right-handed 310
Helix 30	AD3	C	406	427	Right-handed alpha
Helix 31	AD4	C	429	439	Right-handed alpha
Helix 32	AD5	B	418	427	Right-handed alpha
Helix 33	AD6	B	448	455	Right-handed alpha
Helix 34	AD7	B	455	466	Right-handed alpha
Helix 35	AD8	B	509	515	Right-handed alpha
Helix 36	AD9	B	523	527	Right-handed 310
Helix 37	AE1	B	528	534	Right-handed alpha
Helix 38	AE2	B	566	575	Right-handed alpha
Helix 39	AE3	B	577	583	Right-handed alpha
Helix 40	AE4	B	607	615	Right-handed alpha
Helix 41	AE5	B	628	632	Right-handed 310
Helix 42	AE6	B	633	643	Right-handed alpha
Helix 43	AE7	B	654	660	Right-handed alpha
Helix 44	AE8	D	7	23	Right-handed alpha
Helix 45	AE9	D	37	51	Right-handed alpha
Helix 46	AF1	D	61	67	Right-handed alpha
Helix 47	AF2	D	68	72	Right-handed 310
Helix 48	AF3	D	76	88	Right-handed alpha
Helix 49	AF4	D	123	130	Right-handed alpha
Helix 50	AF5	D	155	160	Right-handed alpha
Helix 51	AF6	D	177	191	Right-handed alpha
Helix 52	AF7	D	239	247	Right-handed alpha
Helix 53	AF8	D	247	254	Right-handed alpha
Helix 54	AF9	D	283	295	Right-handed alpha
Helix 55	AG1	D	319	366	Right-handed alpha
Helix 56	AG2	D	378	385	Right-handed alpha
Helix 57	AG3	D	386	389	Right-handed 310
Helix 58	AG4	D	391	396	Right-handed alpha
Helix 59	AG5	D	399	403	Right-handed 310
Helix 60	AG6	D	404	428	Right-handed alpha
Helix 61	AG7	D	429	437	Right-handed alpha

There are 22 sheets in PDB entry 9JNK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	411	415	parallel
Strand 3	A	552	555	parallel
Strand 4	A	586	588	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	542	545	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	495	first strand
Strand 2	A	482	487	anti-parallel
Strand 3	A	520	522	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	508	first strand
Strand 2	A	498	502	anti-parallel
Strand 3	A	538	540	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	605	first strand
Strand 2	A	594	598	anti-parallel
Strand 3	A	622	625	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	647	first strand
Strand 2	C	2	4	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	119	122	anti-parallel
Strand 3	C	98	101	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	170	172	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	211	first strand
Strand 2	C	214	218	anti-parallel
Strand 3	C	298	301	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	228	231	anti-parallel
Strand 3	C	270	274	anti-parallel
Strand 4	C	257	261	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	308	first strand
Strand 2	C	314	317	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	410	415	parallel
Strand 3	B	551	555	parallel
Strand 4	B	586	588	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	476	first strand
Strand 2	B	542	545	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	495	first strand
Strand 2	B	482	487	anti-parallel
Strand 3	B	520	522	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	508	first strand
Strand 2	B	498	502	anti-parallel
Strand 3	B	538	540	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	605	first strand
Strand 2	B	594	598	anti-parallel
Strand 3	B	622	625	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	647	first strand
Strand 2	D	2	4	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	119	122	anti-parallel
Strand 3	D	98	101	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	170	172	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	211	first strand
Strand 2	D	214	218	anti-parallel
Strand 3	D	298	301	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	223	first strand
Strand 2	D	228	231	anti-parallel
Strand 3	D	270	274	anti-parallel
Strand 4	D	257	261	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	308	first strand
Strand 2	D	314	317	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JNK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNK