Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JNL entry

There are 2 chains in PDB entry 9JNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 18GLN 284
B
 HIS 23GLU 50
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 9JNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
46 48Right-handed 310
Helix 4
AA4
A
51 59Right-handed alpha
Helix 5
AA5
A
61 72Right-handed alpha
Helix 6
AA6
A
73 77Right-handed 310
Helix 7
AA7
A
83 103Right-handed alpha
Helix 8
AA8
A
106 113Right-handed alpha
Helix 9
AA9
A
114 118Right-handed 310
Helix 10
AB1
A
119 125Right-handed alpha
Helix 11
AB2
A
129 148Right-handed alpha
Helix 12
AB3
A
151 161Right-handed alpha
Helix 13
AB4
A
162 174Right-handed alpha
Helix 14
AB5
A
175 192Right-handed alpha
Helix 15
AB6
A
192 200Right-handed alpha
Helix 16
AB7
A
202 223Right-handed alpha
Helix 17
AB8
A
225 240Right-handed alpha
Helix 18
AB9
A
242 253Right-handed alpha
Helix 19
AC1
A
254 258Right-handed 310
Helix 20
AC2
A
259 261Right-handed 310
Helix 21
AC3
A
262 267Right-handed alpha
Helix 22
AC4
A
269 283Right-handed alpha
Helix 23
AC5
B
27 43Right-handed alpha
Back to top of page
There are no sheets in PDB entry 9JNL
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il