Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JNN entry

There are 12 chains in PDB entry 9JNN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 841
B	ILE 35	GLN 845
C	LYS 25	LYS 841
D	ILE 35	GLN 845
E	ASP 21	SER 138
F	ILE 21	LYS 130
G	VAL 22	VAL 140
H	ASP 21	LYS 126
I	ASP 21	SER 138
J	ILE 21	LYS 130
K	VAL 22	VAL 140
L	ASP 21	LYS 126

There are122 helices in PDB entry 9JNN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	51	Right-handed alpha
Helix 2	AA2	A	70	81	Right-handed alpha
Helix 3	AA3	A	103	113	Right-handed alpha
Helix 4	AA4	A	147	153	Right-handed alpha
Helix 5	AA5	A	153	159	Right-handed alpha
Helix 6	AA6	A	170	186	Right-handed alpha
Helix 7	AA7	A	204	213	Right-handed alpha
Helix 8	AA8	A	224	238	Right-handed alpha
Helix 9	AA9	A	251	255	Right-handed 310
Helix 10	AB1	A	256	261	Right-handed alpha
Helix 11	AB2	A	276	298	Right-handed alpha
Helix 12	AB3	A	316	327	Right-handed alpha
Helix 13	AB4	A	457	471	Right-handed alpha
Helix 14	AB5	A	499	506	Right-handed alpha
Helix 15	AB6	A	520	527	Right-handed alpha
Helix 16	AB7	A	559	583	Right-handed alpha
Helix 17	AB8	A	603	615	Right-handed alpha
Helix 18	AB9	A	626	657	Right-handed alpha
Helix 19	AC1	A	687	696	Right-handed alpha
Helix 20	AC2	A	699	707	Right-handed alpha
Helix 21	AC3	A	708	710	Right-handed 310
Helix 22	AC4	A	713	723	Right-handed alpha
Helix 23	AC5	A	733	744	Right-handed alpha
Helix 24	AC6	A	767	781	Right-handed alpha
Helix 25	AC7	A	784	792	Right-handed alpha
Helix 26	AC8	A	810	812	Right-handed 310
Helix 27	AC9	A	813	827	Right-handed alpha
Helix 28	AD1	A	829	841	Right-handed alpha
Helix 29	AD2	B	46	54	Right-handed alpha
Helix 30	AD3	B	77	91	Right-handed alpha
Helix 31	AD4	B	106	120	Right-handed alpha
Helix 32	AD5	B	127	131	Right-handed 310
Helix 33	AD6	B	149	164	Right-handed alpha
Helix 34	AD7	B	178	193	Right-handed alpha
Helix 35	AD8	B	209	221	Right-handed alpha
Helix 36	AD9	B	233	248	Right-handed alpha
Helix 37	AE1	B	259	264	Right-handed alpha
Helix 38	AE2	B	288	312	Right-handed alpha
Helix 39	AE3	B	328	340	Right-handed alpha
Helix 40	AE4	B	459	473	Right-handed alpha
Helix 41	AE5	B	495	503	Right-handed alpha
Helix 42	AE6	B	516	523	Right-handed alpha
Helix 43	AE7	B	548	552	Right-handed 310
Helix 44	AE8	B	555	579	Right-handed alpha
Helix 45	AE9	B	603	615	Right-handed alpha
Helix 46	AF1	B	625	627	Right-handed 310
Helix 47	AF2	B	628	654	Right-handed alpha
Helix 48	AF3	B	668	673	Right-handed alpha
Helix 49	AF4	B	674	677	Right-handed 310
Helix 50	AF5	B	689	699	Right-handed alpha
Helix 51	AF6	B	699	709	Right-handed alpha
Helix 52	AF7	B	714	723	Right-handed alpha
Helix 53	AF8	B	732	742	Right-handed alpha
Helix 54	AF9	B	771	786	Right-handed alpha
Helix 55	AG1	B	788	797	Right-handed alpha
Helix 56	AG2	B	799	803	Right-handed 310
Helix 57	AG3	B	814	817	Right-handed 310
Helix 58	AG4	B	818	841	Right-handed alpha
Helix 59	AG5	B	842	845	Right-handed 310
Helix 60	AG6	C	35	51	Right-handed alpha
Helix 61	AG7	C	70	81	Right-handed alpha
Helix 62	AG8	C	103	113	Right-handed alpha
Helix 63	AG9	C	147	153	Right-handed alpha
Helix 64	AH1	C	153	159	Right-handed alpha
Helix 65	AH2	C	170	186	Right-handed alpha
Helix 66	AH3	C	204	213	Right-handed alpha
Helix 67	AH4	C	224	238	Right-handed alpha
Helix 68	AH5	C	251	255	Right-handed 310
Helix 69	AH6	C	256	261	Right-handed alpha
Helix 70	AH7	C	276	298	Right-handed alpha
Helix 71	AH8	C	316	327	Right-handed alpha
Helix 72	AH9	C	457	471	Right-handed alpha
Helix 73	AI1	C	499	506	Right-handed alpha
Helix 74	AI2	C	520	527	Right-handed alpha
Helix 75	AI3	C	559	583	Right-handed alpha
Helix 76	AI4	C	603	615	Right-handed alpha
Helix 77	AI5	C	626	657	Right-handed alpha
Helix 78	AI6	C	687	696	Right-handed alpha
Helix 79	AI7	C	699	707	Right-handed alpha
Helix 80	AI8	C	708	710	Right-handed 310
Helix 81	AI9	C	713	723	Right-handed alpha
Helix 82	AJ1	C	733	744	Right-handed alpha
Helix 83	AJ2	C	767	781	Right-handed alpha
Helix 84	AJ3	C	784	792	Right-handed alpha
Helix 85	AJ4	C	810	812	Right-handed 310
Helix 86	AJ5	C	813	827	Right-handed alpha
Helix 87	AJ6	C	829	841	Right-handed alpha
Helix 88	AJ7	D	46	54	Right-handed alpha
Helix 89	AJ8	D	77	91	Right-handed alpha
Helix 90	AJ9	D	106	120	Right-handed alpha
Helix 91	AK1	D	127	131	Right-handed 310
Helix 92	AK2	D	149	164	Right-handed alpha
Helix 93	AK3	D	178	193	Right-handed alpha
Helix 94	AK4	D	209	221	Right-handed alpha
Helix 95	AK5	D	233	248	Right-handed alpha
Helix 96	AK6	D	259	264	Right-handed alpha
Helix 97	AK7	D	288	312	Right-handed alpha
Helix 98	AK8	D	328	340	Right-handed alpha
Helix 99	AK9	D	459	473	Right-handed alpha
Helix 100	AL1	D	495	503	Right-handed alpha
Helix 101	AL2	D	516	523	Right-handed alpha
Helix 102	AL3	D	548	552	Right-handed 310
Helix 103	AL4	D	555	579	Right-handed alpha
Helix 104	AL5	D	603	615	Right-handed alpha
Helix 105	AL6	D	625	627	Right-handed 310
Helix 106	AL7	D	628	654	Right-handed alpha
Helix 107	AL8	D	668	673	Right-handed alpha
Helix 108	AL9	D	674	677	Right-handed 310
Helix 109	AM1	D	689	699	Right-handed alpha
Helix 110	AM2	D	699	709	Right-handed alpha
Helix 111	AM3	D	714	723	Right-handed alpha
Helix 112	AM4	D	732	742	Right-handed alpha
Helix 113	AM5	D	771	786	Right-handed alpha
Helix 114	AM6	D	788	797	Right-handed alpha
Helix 115	AM7	D	799	803	Right-handed 310
Helix 116	AM8	D	814	817	Right-handed 310
Helix 117	AM9	D	818	841	Right-handed alpha
Helix 118	AN1	D	842	845	Right-handed 310
Helix 119	AN2	E	82	85	Right-handed 310
Helix 120	AN3	F	102	106	Right-handed 310
Helix 121	AN4	I	82	85	Right-handed 310
Helix 122	AN5	J	102	106	Right-handed 310

There are 46 sheets in PDB entry 9JNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	60	65	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	118	120	parallel
Strand 3	A	137	139	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	194	197	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	267	271	parallel
Strand 3	A	351	357	anti-parallel
Strand 4	A	360	367	anti-parallel
Strand 5	A	372	374	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	397	402	parallel
Strand 3	A	512	513	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	450	456	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	496	497	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	532	542	anti-parallel
Strand 4	A	753	759	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	36	41	parallel
Strand 3	B	94	100	parallel
Strand 4	B	123	125	parallel
Strand 5	B	143	145	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	205	first strand
Strand 2	B	168	174	parallel
Strand 3	B	227	231	parallel
Strand 4	B	255	258	parallel
Strand 5	B	277	282	parallel
Strand 6	B	362	367	anti-parallel
Strand 7	B	373	380	anti-parallel
Strand 8	B	383	386	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	453	458	anti-parallel
Strand 3	B	434	438	anti-parallel
Strand 4	B	475	480	parallel
Strand 5	B	405	410	parallel
Strand 6	B	508	509	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	493	494	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	525	first strand
Strand 2	B	765	766	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	731	parallel
Strand 3	B	531	539	anti-parallel
Strand 4	B	748	750	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	731	parallel
Strand 3	B	531	539	anti-parallel
Strand 4	B	757	761	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	32	first strand
Strand 2	C	60	65	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	118	120	parallel
Strand 3	C	137	139	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	168	first strand
Strand 2	C	194	197	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	267	271	parallel
Strand 3	C	351	357	anti-parallel
Strand 4	C	360	367	anti-parallel
Strand 5	C	372	374	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	513	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	413	first strand
Strand 2	C	450	456	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	496	497	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	532	542	anti-parallel
Strand 4	C	753	759	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	36	41	parallel
Strand 3	D	94	100	parallel
Strand 4	D	123	125	parallel
Strand 5	D	143	145	parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	205	first strand
Strand 2	D	168	174	parallel
Strand 3	D	227	231	parallel
Strand 4	D	255	258	parallel
Strand 5	D	277	282	parallel
Strand 6	D	362	367	anti-parallel
Strand 7	D	373	380	anti-parallel
Strand 8	D	383	386	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	453	458	anti-parallel
Strand 3	D	434	438	anti-parallel
Strand 4	D	475	480	parallel
Strand 5	D	405	410	parallel
Strand 6	D	508	509	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	490	first strand
Strand 2	D	493	494	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	525	first strand
Strand 2	D	765	766	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	683	684	first strand
Strand 2	D	728	731	parallel
Strand 3	D	531	539	anti-parallel
Strand 4	D	748	750	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	683	684	first strand
Strand 2	D	728	731	parallel
Strand 3	D	531	539	anti-parallel
Strand 4	D	757	761	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	38	45	anti-parallel
Strand 3	E	98	103	anti-parallel
Strand 4	E	88	93	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	E	133	137	parallel
Strand 3	E	112	119	anti-parallel
Strand 4	E	54	61	anti-parallel
Strand 5	E	65	73	anti-parallel
Strand 6	E	78	80	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	26	first strand
Strand 2	F	40	43	anti-parallel
Strand 3	F	93	98	anti-parallel
Strand 4	F	85	90	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	77	first strand
Strand 2	F	68	72	anti-parallel
Strand 3	F	56	61	anti-parallel
Strand 4	F	108	113	anti-parallel
Strand 5	F	125	126	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	27	first strand
Strand 2	G	38	45	anti-parallel
Strand 3	G	98	103	anti-parallel
Strand 4	G	89	93	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	67	first strand
Strand 2	G	55	59	anti-parallel
Strand 3	G	113	117	anti-parallel
Strand 4	G	136	137	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	27	first strand
Strand 2	H	39	44	anti-parallel
Strand 3	H	90	95	anti-parallel
Strand 4	H	83	87	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	68	first strand
Strand 2	H	54	58	anti-parallel
Strand 3	H	105	109	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	27	first strand
Strand 2	I	38	45	anti-parallel
Strand 3	I	98	103	anti-parallel
Strand 4	I	88	93	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	31	32	first strand
Strand 2	I	133	137	parallel
Strand 3	I	112	119	anti-parallel
Strand 4	I	54	61	anti-parallel
Strand 5	I	65	73	anti-parallel
Strand 6	I	78	80	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	24	26	first strand
Strand 2	J	40	43	anti-parallel
Strand 3	J	93	98	anti-parallel
Strand 4	J	85	90	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	77	first strand
Strand 2	J	68	72	anti-parallel
Strand 3	J	56	61	anti-parallel
Strand 4	J	108	113	anti-parallel
Strand 5	J	125	126	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	23	27	first strand
Strand 2	K	38	45	anti-parallel
Strand 3	K	98	103	anti-parallel
Strand 4	K	89	93	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	67	first strand
Strand 2	K	55	59	anti-parallel
Strand 3	K	113	117	anti-parallel
Strand 4	K	136	137	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	27	first strand
Strand 2	L	39	44	anti-parallel
Strand 3	L	90	95	anti-parallel
Strand 4	L	83	87	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	68	first strand
Strand 2	L	54	58	anti-parallel
Strand 3	L	105	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JNN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNN