Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JNP entry

There are 11 chains in PDB entry 9JNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ARG 134
B	ALA 15	GLY 101
C	ALA 12	LYS 118
D	THR 29	ALA 121
E	ARG 40	ARG 134
F	ARG 17	GLY 102
G	ALA 12	LYS 118
H	THR 29	ALA 121
I	T 2	T 147
J	A 1	A 146
K	GLU 182	ARG 655

There are 58 helices in PDB entry 9JNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	15	19	Right-handed 310
Helix 6	AA6	B	25	29	Right-handed 310
Helix 7	AA7	B	30	42	Right-handed alpha
Helix 8	AA8	B	49	76	Right-handed alpha
Helix 9	AA9	B	82	94	Right-handed alpha
Helix 10	AB1	C	16	22	Right-handed alpha
Helix 11	AB2	C	26	36	Right-handed alpha
Helix 12	AB3	C	45	73	Right-handed alpha
Helix 13	AB4	C	79	90	Right-handed alpha
Helix 14	AB5	C	90	97	Right-handed alpha
Helix 15	AB6	C	112	116	Right-handed 310
Helix 16	AB7	D	34	46	Right-handed alpha
Helix 17	AB8	D	52	81	Right-handed alpha
Helix 18	AB9	D	87	99	Right-handed alpha
Helix 19	AC1	D	100	121	Right-handed alpha
Helix 20	AC2	E	44	57	Right-handed alpha
Helix 21	AC3	E	63	76	Right-handed alpha
Helix 22	AC4	E	85	114	Right-handed alpha
Helix 23	AC5	E	120	132	Right-handed alpha
Helix 24	AC6	F	24	29	Right-handed 310
Helix 25	AC7	F	30	41	Right-handed alpha
Helix 26	AC8	F	49	76	Right-handed alpha
Helix 27	AC9	F	82	94	Right-handed alpha
Helix 28	AD1	G	16	22	Right-handed alpha
Helix 29	AD2	G	26	36	Right-handed alpha
Helix 30	AD3	G	46	73	Right-handed alpha
Helix 31	AD4	G	79	89	Right-handed alpha
Helix 32	AD5	G	90	97	Right-handed alpha
Helix 33	AD6	G	112	116	Right-handed 310
Helix 34	AD7	H	34	46	Right-handed alpha
Helix 35	AD8	H	52	81	Right-handed alpha
Helix 36	AD9	H	87	99	Right-handed alpha
Helix 37	AE1	H	101	121	Right-handed alpha
Helix 38	AE2	K	197	213	Right-handed alpha
Helix 39	AE3	K	226	241	Right-handed alpha
Helix 40	AE4	K	253	255	Right-handed 310
Helix 41	AE5	K	256	268	Right-handed alpha
Helix 42	AE6	K	279	290	Right-handed alpha
Helix 43	AE7	K	303	309	Right-handed alpha
Helix 44	AE8	K	309	314	Right-handed alpha
Helix 45	AE9	K	326	330	Right-handed 310
Helix 46	AF1	K	334	341	Right-handed alpha
Helix 47	AF2	K	359	371	Right-handed alpha
Helix 48	AF3	K	377	386	Right-handed alpha
Helix 49	AF4	K	397	406	Right-handed alpha
Helix 50	AF5	K	434	446	Right-handed alpha
Helix 51	AF6	K	467	478	Right-handed alpha
Helix 52	AF7	K	479	482	Right-handed 310
Helix 53	AF8	K	495	500	Right-handed alpha
Helix 54	AF9	K	501	518	Right-handed alpha
Helix 55	AG1	K	527	541	Right-handed alpha
Helix 56	AG2	K	553	566	Right-handed alpha
Helix 57	AG3	K	601	610	Right-handed alpha
Helix 58	AG4	K	631	649	Right-handed alpha

There are 12 sheets in PDB entry 9JNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	275	first strand
Strand 2	K	298	302	parallel
Strand 3	K	248	252	parallel
Strand 4	K	317	324	parallel
Strand 5	K	344	351	parallel
Strand 6	K	218	219	parallel
Strand 7	K	409	410	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	425	431	first strand
Strand 2	K	622	628	parallel
Strand 3	K	592	595	parallel
Strand 4	K	521	525	parallel
Strand 5	K	573	577	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNP