Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JNR entry

There are 2 chains in PDB entry 9JNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 15HIS 343
B
 GLN 14HIS 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9JNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
46 52Right-handed alpha
Helix 3
AA3
A
69 76Right-handed alpha
Helix 4
AA4
A
93 100Right-handed alpha
Helix 5
AA5
A
111 128Right-handed alpha
Helix 6
AA6
A
129 139Right-handed alpha
Helix 7
AA7
A
141 148Right-handed 310
Helix 8
AA8
A
164 177Right-handed alpha
Helix 9
AA9
A
191 196Right-handed alpha
Helix 10
AB1
A
204 212Right-handed alpha
Helix 11
AB2
A
230 235Right-handed alpha
Helix 12
AB3
A
248 252Right-handed 310
Helix 13
AB4
A
253 263Right-handed alpha
Helix 14
AB5
A
283 288Right-handed 310
Helix 15
AB6
A
301 322Right-handed alpha
Helix 16
AB7
A
330 332Right-handed 310
Helix 17
AB8
A
333 342Right-handed alpha
Helix 18
AB9
B
27 35Right-handed alpha
Helix 19
AC1
B
46 54Right-handed alpha
Helix 20
AC2
B
69 76Right-handed alpha
Helix 21
AC3
B
93 101Right-handed alpha
Helix 22
AC4
B
111 128Right-handed alpha
Helix 23
AC5
B
129 140Right-handed alpha
Helix 24
AC6
B
141 148Right-handed 310
Helix 25
AC7
B
164 179Right-handed alpha
Helix 26
AC8
B
190 196Right-handed alpha
Helix 27
AC9
B
204 212Right-handed alpha
Helix 28
AD1
B
230 237Right-handed alpha
Helix 29
AD2
B
248 252Right-handed 310
Helix 30
AD3
B
253 263Right-handed alpha
Helix 31
AD4
B
283 288Right-handed 310
Helix 32
AD5
B
301 321Right-handed alpha
Helix 33
AD6
B
330 332Right-handed 310
Helix 34
AD7
B
333 342Right-handed alpha
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There are 4 sheets in PDB entry 9JNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
17 21parallel
Strand 3
A
59 62parallel
Strand 4
A
81 84parallel
Strand 5
A
103 105parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
181 185parallel
Strand 3
A
157 161parallel
Strand 4
A
214 217parallel
Strand 5
A
242 245parallel
Strand 6
A
268 271parallel
Strand 7
A
291 293parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
17 21parallel
Strand 3
B
59 62parallel
Strand 4
B
81 84parallel
Strand 5
B
103 105parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
181 185parallel
Strand 3
B
157 161parallel
Strand 4
B
214 217parallel
Strand 5
B
242 245parallel
Strand 6
B
268 271parallel
Strand 7
B
291 293parallel
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