Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JNS entry

There are 18 chains in PDB entry 9JNS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ALA 1	ALA 55
2	GLN 6	LYS 46
A	G 1	U 2903
C	GLN 10	LYS 244
D	MET 1	LYS 123
E	MET 1	ALA 201
J	MET 1	ILE 142
K	MET 1	VAL 122
L	ARG 2	GLU 144
N	MET 1	SER 119
P	SER 1	LEU 113
Q	ALA 1	ALA 117
R	MET 1	ALA 103
S	MET 1	ARG 110
T	ILE 2	LEU 93
U	ALA 1	ILE 102
Y	MET 1	ALA 63
Z	ALA 1	GLU 58

There are 60 helices in PDB entry 9JNS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	8	17	Right-handed alpha
Helix 2	AA2	2	8	16	Right-handed alpha
Helix 3	AA3	2	17	23	Right-handed alpha
Helix 4	AA4	2	24	38	Right-handed alpha
Helix 5	AA5	C	15	24	Right-handed alpha
Helix 6	AA6	C	44	52	Right-handed alpha
Helix 7	AA7	C	61	72	Right-handed alpha
Helix 8	AA8	C	109	116	Right-handed alpha
Helix 9	AA9	C	129	134	Right-handed alpha
Helix 10	AB1	C	140	148	Right-handed alpha
Helix 11	AB2	C	159	163	Right-handed 310
Helix 12	AB3	C	187	200	Right-handed alpha
Helix 13	AB4	C	209	219	Right-handed alpha
Helix 14	AB5	C	228	243	Right-handed alpha
Helix 15	AB6	D	56	60	Right-handed 310
Helix 16	AB7	D	61	72	Right-handed alpha
Helix 17	AB8	D	97	102	Right-handed 310
Helix 18	AB9	E	15	20	Right-handed alpha
Helix 19	AC1	E	24	38	Right-handed alpha
Helix 20	AC2	E	97	115	Right-handed alpha
Helix 21	AC3	E	130	141	Right-handed alpha
Helix 22	AC4	E	154	161	Right-handed alpha
Helix 23	AC5	E	176	183	Right-handed alpha
Helix 24	AC6	E	189	200	Right-handed alpha
Helix 25	AC7	J	24	38	Right-handed alpha
Helix 26	AC8	J	58	62	Right-handed 310
Helix 27	AC9	J	67	72	Right-handed alpha
Helix 28	AD1	J	88	96	Right-handed alpha
Helix 29	AD2	J	98	107	Right-handed alpha
Helix 30	AD3	J	112	120	Right-handed alpha
Helix 31	AD4	J	132	136	Right-handed 310
Helix 32	AD5	K	112	117	Right-handed alpha
Helix 33	AD6	L	2	6	Right-handed 310
Helix 34	AD7	L	28	33	Right-handed 310
Helix 35	AD8	L	129	133	Right-handed 310
Helix 36	AD9	N	13	32	Right-handed alpha
Helix 37	AE1	N	38	56	Right-handed alpha
Helix 38	AE2	N	59	69	Right-handed alpha
Helix 39	AE3	N	72	79	Right-handed alpha
Helix 40	AE4	N	82	87	Right-handed alpha
Helix 41	AE5	P	2	11	Right-handed alpha
Helix 42	AE6	P	52	55	Right-handed 310
Helix 43	AE7	P	96	102	Right-handed 310
Helix 44	AE8	Q	5	19	Right-handed alpha
Helix 45	AE9	Q	24	29	Right-handed 310
Helix 46	AF1	Q	30	71	Right-handed alpha
Helix 47	AF2	Q	74	85	Right-handed alpha
Helix 48	AF3	Q	91	101	Right-handed alpha
Helix 49	AF4	Q	102	117	Right-handed alpha
Helix 50	AF5	S	14	22	Right-handed alpha
Helix 51	AF6	S	28	37	Right-handed alpha
Helix 52	AF7	S	41	61	Right-handed alpha
Helix 53	AF8	T	3	8	Right-handed alpha
Helix 54	AF9	T	17	28	Right-handed alpha
Helix 55	AG1	T	39	51	Right-handed alpha
Helix 56	AG2	Y	2	8	Right-handed alpha
Helix 57	AG3	Y	9	34	Right-handed alpha
Helix 58	AG4	Y	41	61	Right-handed alpha
Helix 59	AG5	Z	16	27	Right-handed alpha
Helix 60	AG6	Z	40	50	Right-handed alpha

There are 23 sheets in PDB entry 9JNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	28	29	first strand
Strand 2	0	36	37	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	47	48	first strand
Strand 2	0	51	52	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	54	57	parallel
Strand 3	C	78	80	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	122	128	parallel
Strand 3	C	171	178	anti-parallel
Strand 4	C	150	158	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	15	first strand
Strand 2	D	21	29	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	83	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	32	38	anti-parallel
Strand 4	D	95	96	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	3	first strand
Strand 2	E	12	13	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	171	first strand
Strand 2	E	146	150	parallel
Strand 3	E	185	188	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	124	first strand
Strand 2	J	53	57	parallel
Strand 3	J	15	19	parallel
Strand 4	J	138	139	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	77	first strand
Strand 2	J	84	87	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	10	first strand
Strand 2	K	18	24	anti-parallel
Strand 3	K	39	45	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	86	anti-parallel
Strand 6	K	6	10	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	70	first strand
Strand 2	K	76	78	anti-parallel
Strand 3	P	67	74	anti-parallel
Strand 4	P	57	64	anti-parallel
Strand 5	P	36	50	anti-parallel
Strand 6	P	24	33	anti-parallel
Strand 7	P	80	85	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	78	first strand
Strand 2	L	110	111	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	109	115	anti-parallel
Strand 3	N	95	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	14	first strand
Strand 2	R	2	6	anti-parallel
Strand 3	R	38	42	anti-parallel
Strand 4	R	47	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	22	first strand
Strand 2	R	92	101	anti-parallel
Strand 3	R	59	68	anti-parallel
Strand 4	R	32	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	77	first strand
Strand 2	R	84	89	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2	10	first strand
Strand 2	S	95	108	anti-parallel
Strand 3	S	70	85	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	29	34	anti-parallel
Strand 3	T	80	87	anti-parallel
Strand 4	T	55	63	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	64	65	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	21	27	anti-parallel
Strand 4	U	9	12	anti-parallel
Strand 5	U	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	43	44	first strand
Strand 2	U	57	58	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	87	first strand
Strand 2	U	90	95	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	34	38	first strand
Strand 2	Z	3	8	anti-parallel
Strand 3	Z	54	57	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JNS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNS