Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JNU entry

There are 11 chains in PDB entry 9JNU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ARG 134
B	ALA 15	GLY 101
C	ALA 12	LYS 118
D	THR 29	ALA 121
E	ARG 40	ARG 134
F	ARG 17	GLY 102
G	ALA 12	LYS 118
H	THR 29	ALA 121
I	T 2	T 147
J	A 1	A 146
K	HIS 81	THR 656

There are 63 helices in PDB entry 9JNU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	75	Right-handed alpha
Helix 3	AA3	A	76	78	Right-handed 310
Helix 4	AA4	A	85	114	Right-handed alpha
Helix 5	AA5	A	120	131	Right-handed alpha
Helix 6	AA6	B	24	29	Right-handed 310
Helix 7	AA7	B	30	42	Right-handed alpha
Helix 8	AA8	B	49	76	Right-handed alpha
Helix 9	AA9	B	82	94	Right-handed alpha
Helix 10	AB1	C	16	21	Right-handed alpha
Helix 11	AB2	C	26	36	Right-handed alpha
Helix 12	AB3	C	46	73	Right-handed alpha
Helix 13	AB4	C	79	90	Right-handed alpha
Helix 14	AB5	C	90	97	Right-handed alpha
Helix 15	AB6	C	112	116	Right-handed 310
Helix 16	AB7	D	34	46	Right-handed alpha
Helix 17	AB8	D	52	81	Right-handed alpha
Helix 18	AB9	D	87	99	Right-handed alpha
Helix 19	AC1	D	101	120	Right-handed alpha
Helix 20	AC2	E	44	55	Right-handed alpha
Helix 21	AC3	E	63	76	Right-handed alpha
Helix 22	AC4	E	85	114	Right-handed alpha
Helix 23	AC5	E	120	131	Right-handed alpha
Helix 24	AC6	F	24	29	Right-handed 310
Helix 25	AC7	F	30	42	Right-handed alpha
Helix 26	AC8	F	49	76	Right-handed alpha
Helix 27	AC9	F	82	94	Right-handed alpha
Helix 28	AD1	G	16	21	Right-handed alpha
Helix 29	AD2	G	26	37	Right-handed alpha
Helix 30	AD3	G	45	73	Right-handed alpha
Helix 31	AD4	G	79	89	Right-handed alpha
Helix 32	AD5	G	90	97	Right-handed alpha
Helix 33	AD6	G	112	116	Right-handed 310
Helix 34	AD7	H	34	46	Right-handed alpha
Helix 35	AD8	H	52	81	Right-handed alpha
Helix 36	AD9	H	87	99	Right-handed alpha
Helix 37	AE1	H	101	121	Right-handed alpha
Helix 38	AE2	K	82	91	Right-handed alpha
Helix 39	AE3	K	101	116	Right-handed alpha
Helix 40	AE4	K	119	127	Right-handed alpha
Helix 41	AE5	K	130	143	Right-handed alpha
Helix 42	AE6	K	197	213	Right-handed alpha
Helix 43	AE7	K	227	242	Right-handed alpha
Helix 44	AE8	K	253	255	Right-handed 310
Helix 45	AE9	K	256	268	Right-handed alpha
Helix 46	AF1	K	279	290	Right-handed alpha
Helix 47	AF2	K	303	309	Right-handed alpha
Helix 48	AF3	K	310	315	Right-handed alpha
Helix 49	AF4	K	326	329	Right-handed 310
Helix 50	AF5	K	334	343	Right-handed alpha
Helix 51	AF6	K	359	371	Right-handed alpha
Helix 52	AF7	K	377	386	Right-handed alpha
Helix 53	AF8	K	396	401	Right-handed alpha
Helix 54	AF9	K	402	406	Right-handed 310
Helix 55	AG1	K	434	446	Right-handed alpha
Helix 56	AG2	K	469	478	Right-handed alpha
Helix 57	AG3	K	479	482	Right-handed 310
Helix 58	AG4	K	495	501	Right-handed alpha
Helix 59	AG5	K	501	518	Right-handed alpha
Helix 60	AG6	K	528	541	Right-handed alpha
Helix 61	AG7	K	553	565	Right-handed alpha
Helix 62	AG8	K	601	614	Right-handed alpha
Helix 63	AG9	K	631	651	Right-handed alpha

There are 10 sheets in PDB entry 9JNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	275	first strand
Strand 2	K	298	302	parallel
Strand 3	K	248	252	parallel
Strand 4	K	321	324	parallel
Strand 5	K	348	351	parallel
Strand 6	K	217	219	parallel
Strand 7	K	409	410	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	425	431	first strand
Strand 2	K	622	628	parallel
Strand 3	K	592	595	parallel
Strand 4	K	521	525	parallel
Strand 5	K	573	577	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JNU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNU