Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JNV entry

There are 11 chains in PDB entry 9JNV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ARG 134
B	GLY 14	GLY 101
C	ALA 12	LYS 118
D	THR 29	ALA 121
E	ARG 40	ARG 134
F	ARG 23	GLY 102
G	ALA 12	LYS 118
H	THR 29	ALA 121
I	T 2	T 147
J	A 1	A 146
K	VAL 76	SER 776

There are 64 helices in PDB entry 9JNV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	86	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	30	42	Right-handed alpha
Helix 6	AA6	B	49	76	Right-handed alpha
Helix 7	AA7	B	82	93	Right-handed alpha
Helix 8	AA8	C	16	22	Right-handed alpha
Helix 9	AA9	C	27	36	Right-handed alpha
Helix 10	AB1	C	46	72	Right-handed alpha
Helix 11	AB2	C	79	90	Right-handed alpha
Helix 12	AB3	C	91	97	Right-handed alpha
Helix 13	AB4	C	112	116	Right-handed 310
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	101	121	Right-handed alpha
Helix 18	AB9	E	44	57	Right-handed alpha
Helix 19	AC1	E	63	76	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	132	Right-handed alpha
Helix 22	AC4	F	24	29	Right-handed 310
Helix 23	AC5	F	30	42	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	94	Right-handed alpha
Helix 26	AC8	G	16	22	Right-handed alpha
Helix 27	AC9	G	26	36	Right-handed alpha
Helix 28	AD1	G	46	73	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	91	97	Right-handed alpha
Helix 31	AD4	G	112	116	Right-handed 310
Helix 32	AD5	H	34	46	Right-handed alpha
Helix 33	AD6	H	52	81	Right-handed alpha
Helix 34	AD7	H	87	99	Right-handed alpha
Helix 35	AD8	H	101	120	Right-handed alpha
Helix 36	AD9	K	82	88	Right-handed alpha
Helix 37	AE1	K	101	116	Right-handed alpha
Helix 38	AE2	K	119	130	Right-handed alpha
Helix 39	AE3	K	130	143	Right-handed alpha
Helix 40	AE4	K	197	213	Right-handed alpha
Helix 41	AE5	K	226	241	Right-handed alpha
Helix 42	AE6	K	253	255	Right-handed 310
Helix 43	AE7	K	256	265	Right-handed alpha
Helix 44	AE8	K	279	290	Right-handed alpha
Helix 45	AE9	K	303	309	Right-handed alpha
Helix 46	AF1	K	309	314	Right-handed alpha
Helix 47	AF2	K	325	329	Right-handed 310
Helix 48	AF3	K	334	341	Right-handed alpha
Helix 49	AF4	K	360	371	Right-handed alpha
Helix 50	AF5	K	378	386	Right-handed alpha
Helix 51	AF6	K	393	406	Right-handed alpha
Helix 52	AF7	K	413	417	Right-handed 310
Helix 53	AF8	K	434	447	Right-handed alpha
Helix 54	AF9	K	467	476	Right-handed alpha
Helix 55	AG1	K	478	482	Right-handed 310
Helix 56	AG2	K	495	500	Right-handed alpha
Helix 57	AG3	K	501	518	Right-handed alpha
Helix 58	AG4	K	527	541	Right-handed alpha
Helix 59	AG5	K	553	566	Right-handed alpha
Helix 60	AG6	K	579	583	Right-handed 310
Helix 61	AG7	K	601	614	Right-handed alpha
Helix 62	AG8	K	631	653	Right-handed alpha
Helix 63	AG9	K	707	728	Right-handed alpha
Helix 64	AH1	K	730	737	Right-handed alpha

There are 13 sheets in PDB entry 9JNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	275	first strand
Strand 2	K	298	302	parallel
Strand 3	K	249	252	parallel
Strand 4	K	321	323	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	425	426	first strand
Strand 2	K	622	623	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	430	431	first strand
Strand 2	K	627	628	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	521	525	first strand
Strand 2	K	571	577	parallel
Strand 3	K	544	547	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JNV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JNV