Analysis of interatomic Contacts of Structural Units in PDB entry:
9JO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JO5 entry

There are 11 chains in PDB entry 9JO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ARG 134
B	GLY 14	GLY 101
C	ALA 12	LYS 118
D	THR 29	ALA 121
E	ARG 40	ARG 134
F	GLY 13	GLY 102
G	ALA 12	LYS 118
H	THR 29	ALA 121
I	T 2	T 147
J	A 1	A 146
K	ASP 82	TRP 745

There are 63 helices in PDB entry 9JO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	55	Right-handed alpha
Helix 2	AA2	A	64	76	Right-handed alpha
Helix 3	AA3	A	86	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	26	36	Right-handed alpha
Helix 11	AB2	C	46	72	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	92	97	Right-handed alpha
Helix 14	AB5	C	112	116	Right-handed 310
Helix 15	AB6	D	34	46	Right-handed alpha
Helix 16	AB7	D	52	81	Right-handed alpha
Helix 17	AB8	D	87	99	Right-handed alpha
Helix 18	AB9	D	101	120	Right-handed alpha
Helix 19	AC1	E	44	55	Right-handed alpha
Helix 20	AC2	E	64	76	Right-handed alpha
Helix 21	AC3	E	85	114	Right-handed alpha
Helix 22	AC4	E	120	131	Right-handed alpha
Helix 23	AC5	F	24	29	Right-handed 310
Helix 24	AC6	F	30	41	Right-handed alpha
Helix 25	AC7	F	49	76	Right-handed alpha
Helix 26	AC8	F	82	94	Right-handed alpha
Helix 27	AC9	G	16	22	Right-handed alpha
Helix 28	AD1	G	27	36	Right-handed alpha
Helix 29	AD2	G	46	73	Right-handed alpha
Helix 30	AD3	G	79	90	Right-handed alpha
Helix 31	AD4	G	92	97	Right-handed alpha
Helix 32	AD5	G	112	116	Right-handed 310
Helix 33	AD6	H	34	46	Right-handed alpha
Helix 34	AD7	H	52	81	Right-handed alpha
Helix 35	AD8	H	87	99	Right-handed alpha
Helix 36	AD9	H	100	121	Right-handed alpha
Helix 37	AE1	K	83	91	Right-handed alpha
Helix 38	AE2	K	102	115	Right-handed alpha
Helix 39	AE3	K	119	130	Right-handed alpha
Helix 40	AE4	K	130	141	Right-handed alpha
Helix 41	AE5	K	197	213	Right-handed alpha
Helix 42	AE6	K	226	241	Right-handed alpha
Helix 43	AE7	K	253	255	Right-handed 310
Helix 44	AE8	K	256	267	Right-handed alpha
Helix 45	AE9	K	279	290	Right-handed alpha
Helix 46	AF1	K	302	309	Right-handed alpha
Helix 47	AF2	K	309	315	Right-handed alpha
Helix 48	AF3	K	325	330	Right-handed 310
Helix 49	AF4	K	334	342	Right-handed alpha
Helix 50	AF5	K	360	371	Right-handed alpha
Helix 51	AF6	K	378	386	Right-handed alpha
Helix 52	AF7	K	390	406	Right-handed alpha
Helix 53	AF8	K	407	409	Right-handed 310
Helix 54	AF9	K	434	448	Right-handed alpha
Helix 55	AG1	K	461	478	Right-handed alpha
Helix 56	AG2	K	501	518	Right-handed alpha
Helix 57	AG3	K	527	542	Right-handed alpha
Helix 58	AG4	K	556	565	Right-handed alpha
Helix 59	AG5	K	601	610	Right-handed alpha
Helix 60	AG6	K	631	654	Right-handed alpha
Helix 61	AG7	K	669	676	Right-handed alpha
Helix 62	AG8	K	678	685	Right-handed alpha
Helix 63	AG9	K	707	728	Right-handed alpha

There are 13 sheets in PDB entry 9JO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	275	first strand
Strand 2	K	298	301	parallel
Strand 3	K	248	251	parallel
Strand 4	K	320	323	parallel
Strand 5	K	348	350	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	425	426	first strand
Strand 2	K	622	623	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	429	431	first strand
Strand 2	K	626	628	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	524	525	first strand
Strand 2	K	576	577	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JO5