Analysis of interatomic Contacts of Structural Units in PDB entry:
9JO9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JO9 entry

There are 20 chains in PDB entry 9JO9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
O	GLU 3	SER 127
S	GLN 1	PRO 206
A	GLU 3	SER 127
B	GLN 1	PRO 206
C	GLU 3	SER 127
D	GLN 1	PRO 206
E	GLU 3	SER 127
F	GLN 1	PRO 206
G	GLU 3	SER 127
H	GLN 1	PRO 206
I	GLU 3	SER 127
J	GLN 1	PRO 206
K	GLU 3	SER 127
L	GLN 1	PRO 206
M	GLU 3	SER 127
N	GLN 1	PRO 206
P	GLU 3	SER 127
Q	GLN 1	PRO 206
R	GLU 3	SER 127
T	GLN 1	PRO 206

There are 34 helices in PDB entry 9JO9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	O	30	34	Right-handed 310
Helix 2	AA2	S	43	46	Right-handed 310
Helix 3	AA3	S	167	177	Right-handed alpha
Helix 4	AA4	A	30	34	Right-handed 310
Helix 5	AA5	B	42	46	Right-handed 310
Helix 6	AA6	B	167	176	Right-handed alpha
Helix 7	AA7	B	186	190	Right-handed 310
Helix 8	AA8	C	30	34	Right-handed 310
Helix 9	AA9	D	42	46	Right-handed 310
Helix 10	AB1	D	147	151	Right-handed 310
Helix 11	AB2	D	167	177	Right-handed alpha
Helix 12	AB3	D	186	190	Right-handed 310
Helix 13	AB4	E	30	34	Right-handed 310
Helix 14	AB5	F	42	46	Right-handed 310
Helix 15	AB6	F	167	177	Right-handed alpha
Helix 16	AB7	G	30	34	Right-handed 310
Helix 17	AB8	H	167	177	Right-handed alpha
Helix 18	AB9	I	30	34	Right-handed 310
Helix 19	AC1	J	43	46	Right-handed 310
Helix 20	AC2	J	167	177	Right-handed alpha
Helix 21	AC3	K	30	34	Right-handed 310
Helix 22	AC4	L	43	46	Right-handed 310
Helix 23	AC5	L	167	177	Right-handed alpha
Helix 24	AC6	M	30	34	Right-handed 310
Helix 25	AC7	N	42	46	Right-handed 310
Helix 26	AC8	N	167	177	Right-handed alpha
Helix 27	AC9	N	186	190	Right-handed 310
Helix 28	AD1	P	30	34	Right-handed 310
Helix 29	AD2	Q	167	177	Right-handed alpha
Helix 30	AD3	Q	186	190	Right-handed 310
Helix 31	AD4	R	30	34	Right-handed 310
Helix 32	AD5	T	42	46	Right-handed 310
Helix 33	AD6	T	167	177	Right-handed alpha
Helix 34	AD7	T	186	190	Right-handed 310

There are 50 sheets in PDB entry 9JO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	5	9	first strand
Strand 2	O	19	27	anti-parallel
Strand 3	O	80	86	anti-parallel
Strand 4	O	70	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	12	15	first strand
Strand 2	O	122	127	parallel
Strand 3	O	94	101	anti-parallel
Strand 4	O	35	41	anti-parallel
Strand 5	O	48	53	anti-parallel
Strand 6	O	60	62	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	114	115	first strand
Strand 2	S	106	111	anti-parallel
Strand 3	S	119	120	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	114	115	first strand
Strand 2	S	106	111	anti-parallel
Strand 3	S	94	101	anti-parallel
Strand 4	S	32	41	anti-parallel
Strand 5	S	154	161	anti-parallel
Strand 6	S	7	11	anti-parallel
Strand 7	S	199	202	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	80	85	first strand
Strand 2	S	72	77	anti-parallel
Strand 3	S	59	68	anti-parallel
Strand 4	S	49	56	anti-parallel
Strand 5	S	132	135	anti-parallel
Strand 6	S	19	22	anti-parallel
Strand 7	S	192	195	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	19	27	anti-parallel
Strand 3	A	80	86	anti-parallel
Strand 4	A	70	75	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	122	127	parallel
Strand 3	A	94	99	anti-parallel
Strand 4	A	36	41	anti-parallel
Strand 5	A	47	53	anti-parallel
Strand 6	A	60	62	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	120	first strand
Strand 2	B	106	111	anti-parallel
Strand 3	B	94	101	anti-parallel
Strand 4	B	32	40	anti-parallel
Strand 5	B	154	161	anti-parallel
Strand 6	B	7	11	anti-parallel
Strand 7	B	199	202	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	85	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	59	68	anti-parallel
Strand 4	B	49	56	anti-parallel
Strand 5	B	132	135	anti-parallel
Strand 6	B	19	22	anti-parallel
Strand 7	B	192	195	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	20	27	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	71	75	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	122	127	parallel
Strand 3	C	94	100	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	120	first strand
Strand 2	D	106	111	anti-parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	32	40	anti-parallel
Strand 5	D	154	162	anti-parallel
Strand 6	D	7	11	anti-parallel
Strand 7	D	199	202	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	85	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	59	68	anti-parallel
Strand 4	D	49	56	anti-parallel
Strand 5	D	132	135	anti-parallel
Strand 6	D	19	22	anti-parallel
Strand 7	D	192	195	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	19	27	anti-parallel
Strand 3	E	80	86	anti-parallel
Strand 4	E	70	75	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	15	first strand
Strand 2	E	122	127	parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	36	41	anti-parallel
Strand 5	E	47	53	anti-parallel
Strand 6	E	60	62	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	15	first strand
Strand 2	E	122	127	parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	117	118	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	106	111	anti-parallel
Strand 3	F	119	120	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	106	111	anti-parallel
Strand 3	F	94	101	anti-parallel
Strand 4	F	32	40	anti-parallel
Strand 5	F	154	161	anti-parallel
Strand 6	F	7	11	anti-parallel
Strand 7	F	199	202	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	85	first strand
Strand 2	F	72	77	anti-parallel
Strand 3	F	59	68	anti-parallel
Strand 4	F	49	56	anti-parallel
Strand 5	F	132	135	anti-parallel
Strand 6	F	19	22	anti-parallel
Strand 7	F	192	195	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	9	first strand
Strand 2	G	19	27	anti-parallel
Strand 3	G	80	86	anti-parallel
Strand 4	G	70	75	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	15	first strand
Strand 2	G	122	127	parallel
Strand 3	G	95	99	anti-parallel
Strand 4	G	36	41	anti-parallel
Strand 5	G	47	53	anti-parallel
Strand 6	G	60	62	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	115	first strand
Strand 2	H	106	111	anti-parallel
Strand 3	H	119	120	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	115	first strand
Strand 2	H	106	111	anti-parallel
Strand 3	H	94	101	anti-parallel
Strand 4	H	32	41	anti-parallel
Strand 5	H	154	161	anti-parallel
Strand 6	H	7	11	anti-parallel
Strand 7	H	199	202	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	85	first strand
Strand 2	H	72	77	anti-parallel
Strand 3	H	59	68	anti-parallel
Strand 4	H	49	56	anti-parallel
Strand 5	H	132	135	anti-parallel
Strand 6	H	19	22	anti-parallel
Strand 7	H	192	195	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	9	first strand
Strand 2	I	19	27	anti-parallel
Strand 3	I	80	86	anti-parallel
Strand 4	I	70	75	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	15	first strand
Strand 2	I	122	127	parallel
Strand 3	I	94	101	anti-parallel
Strand 4	I	35	41	anti-parallel
Strand 5	I	47	53	anti-parallel
Strand 6	I	60	62	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	115	first strand
Strand 2	J	106	111	anti-parallel
Strand 3	J	119	120	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	115	first strand
Strand 2	J	106	111	anti-parallel
Strand 3	J	94	101	anti-parallel
Strand 4	J	32	41	anti-parallel
Strand 5	J	154	161	anti-parallel
Strand 6	J	7	11	anti-parallel
Strand 7	J	199	202	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	80	85	first strand
Strand 2	J	72	77	anti-parallel
Strand 3	J	59	68	anti-parallel
Strand 4	J	49	56	anti-parallel
Strand 5	J	132	135	anti-parallel
Strand 6	J	19	22	anti-parallel
Strand 7	J	192	195	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	9	first strand
Strand 2	K	19	27	anti-parallel
Strand 3	K	80	86	anti-parallel
Strand 4	K	70	75	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	14	first strand
Strand 2	K	122	126	parallel
Strand 3	K	94	99	anti-parallel
Strand 4	K	36	41	anti-parallel
Strand 5	K	47	53	anti-parallel
Strand 6	K	60	62	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	115	first strand
Strand 2	L	106	111	anti-parallel
Strand 3	L	119	120	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	115	first strand
Strand 2	L	106	111	anti-parallel
Strand 3	L	94	101	anti-parallel
Strand 4	L	32	41	anti-parallel
Strand 5	L	154	161	anti-parallel
Strand 6	L	7	11	anti-parallel
Strand 7	L	199	202	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	80	85	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	59	68	anti-parallel
Strand 4	L	49	56	anti-parallel
Strand 5	L	132	135	anti-parallel
Strand 6	L	19	22	anti-parallel
Strand 7	L	192	195	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	9	first strand
Strand 2	M	19	27	anti-parallel
Strand 3	M	80	86	anti-parallel
Strand 4	M	70	75	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	12	15	first strand
Strand 2	M	122	127	parallel
Strand 3	M	95	99	anti-parallel
Strand 4	M	36	41	anti-parallel
Strand 5	M	47	53	anti-parallel
Strand 6	M	61	62	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	115	first strand
Strand 2	N	106	111	anti-parallel
Strand 3	N	119	120	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	115	first strand
Strand 2	N	106	111	anti-parallel
Strand 3	N	94	101	anti-parallel
Strand 4	N	32	40	anti-parallel
Strand 5	N	154	161	anti-parallel
Strand 6	N	7	11	anti-parallel
Strand 7	N	199	202	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	80	85	first strand
Strand 2	N	72	77	anti-parallel
Strand 3	N	59	68	anti-parallel
Strand 4	N	49	56	anti-parallel
Strand 5	N	132	135	anti-parallel
Strand 6	N	19	22	anti-parallel
Strand 7	N	192	195	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	5	9	first strand
Strand 2	P	19	27	anti-parallel
Strand 3	P	80	86	anti-parallel
Strand 4	P	70	75	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	12	15	first strand
Strand 2	P	122	127	parallel
Strand 3	P	94	99	anti-parallel
Strand 4	P	37	41	anti-parallel
Strand 5	P	47	53	anti-parallel
Strand 6	P	60	62	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	114	115	first strand
Strand 2	Q	106	111	anti-parallel
Strand 3	Q	119	120	anti-parallel

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There are 7 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	114	115	first strand
Strand 2	Q	106	111	anti-parallel
Strand 3	Q	94	101	anti-parallel
Strand 4	Q	32	41	anti-parallel
Strand 5	Q	154	161	anti-parallel
Strand 6	Q	7	11	anti-parallel
Strand 7	Q	199	202	anti-parallel

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There are 7 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	80	85	first strand
Strand 2	Q	72	77	anti-parallel
Strand 3	Q	59	68	anti-parallel
Strand 4	Q	49	56	anti-parallel
Strand 5	Q	132	135	anti-parallel
Strand 6	Q	19	22	anti-parallel
Strand 7	Q	192	195	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	5	9	first strand
Strand 2	R	19	27	anti-parallel
Strand 3	R	80	86	anti-parallel
Strand 4	R	70	75	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	12	15	first strand
Strand 2	R	122	127	parallel
Strand 3	R	94	101	anti-parallel
Strand 4	R	35	41	anti-parallel
Strand 5	R	47	53	anti-parallel
Strand 6	R	60	62	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	12	15	first strand
Strand 2	R	122	127	parallel
Strand 3	R	94	101	anti-parallel
Strand 4	R	117	118	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	114	115	first strand
Strand 2	T	106	111	anti-parallel
Strand 3	T	119	120	anti-parallel

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There are 7 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	114	115	first strand
Strand 2	T	106	111	anti-parallel
Strand 3	T	94	101	anti-parallel
Strand 4	T	32	40	anti-parallel
Strand 5	T	154	161	anti-parallel
Strand 6	T	7	11	anti-parallel
Strand 7	T	199	202	anti-parallel

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There are 7 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	80	85	first strand
Strand 2	T	72	77	anti-parallel
Strand 3	T	59	68	anti-parallel
Strand 4	T	49	56	anti-parallel
Strand 5	T	132	135	anti-parallel
Strand 6	T	19	22	anti-parallel
Strand 7	T	192	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JO9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JO9