Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JOA entry

There are 2 chains in PDB entry 9JOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 76ASN 486
B
 LYS 76ASN 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9JOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 104Right-handed alpha
Helix 2
AA2
A
117 129Right-handed alpha
Helix 3
AA3
A
137 139Right-handed 310
Helix 4
AA4
A
140 150Right-handed alpha
Helix 5
AA5
A
161 170Right-handed alpha
Helix 6
AA6
A
182 196Right-handed alpha
Helix 7
AA7
A
204 222Right-handed alpha
Helix 8
AA8
A
231 240Right-handed alpha
Helix 9
AA9
A
242 247Right-handed alpha
Helix 10
AB1
A
255 260Right-handed alpha
Helix 11
AB2
A
278 285Right-handed alpha
Helix 12
AB3
A
286 293Right-handed alpha
Helix 13
AB4
A
299 309Right-handed alpha
Helix 14
AB5
A
309 324Right-handed alpha
Helix 15
AB6
A
326 328Right-handed 310
Helix 16
AB7
A
360 370Right-handed alpha
Helix 17
AB8
A
382 387Right-handed alpha
Helix 18
AB9
A
399 412Right-handed alpha
Helix 19
AC1
A
414 432Right-handed alpha
Helix 20
AC2
A
436 451Right-handed alpha
Helix 21
AC3
A
459 486Right-handed alpha
Helix 22
AC4
B
87 101Right-handed alpha
Helix 23
AC5
B
117 129Right-handed alpha
Helix 24
AC6
B
137 139Right-handed 310
Helix 25
AC7
B
140 150Right-handed alpha
Helix 26
AC8
B
161 171Right-handed alpha
Helix 27
AC9
B
182 196Right-handed alpha
Helix 28
AD1
B
204 222Right-handed alpha
Helix 29
AD2
B
231 241Right-handed alpha
Helix 30
AD3
B
242 247Right-handed alpha
Helix 31
AD4
B
255 260Right-handed alpha
Helix 32
AD5
B
278 283Right-handed alpha
Helix 33
AD6
B
286 293Right-handed alpha
Helix 34
AD7
B
299 309Right-handed alpha
Helix 35
AD8
B
309 324Right-handed alpha
Helix 36
AD9
B
326 328Right-handed 310
Helix 37
AE1
B
360 370Right-handed alpha
Helix 38
AE2
B
382 387Right-handed alpha
Helix 39
AE3
B
399 412Right-handed alpha
Helix 40
AE4
B
414 432Right-handed alpha
Helix 41
AE5
B
436 451Right-handed alpha
Helix 42
AE6
B
459 485Right-handed alpha
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There are 4 sheets in PDB entry 9JOA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
132 135parallel
Strand 3
A
107 114parallel
Strand 4
A
78 83parallel
Strand 5
A
176 179parallel
Strand 6
A
199 202parallel
Strand 7
A
226 229parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 334first strand
Strand 2
A
262 269parallel
Strand 3
A
340 346anti-parallel
Strand 4
A
351 355anti-parallel
Strand 5
B
351 355anti-parallel
Strand 6
B
340 346anti-parallel
Strand 7
B
262 269anti-parallel
Strand 8
B
330 334parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
B
388 390anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 160first strand
Strand 2
B
132 135parallel
Strand 3
B
107 114parallel
Strand 4
B
78 83parallel
Strand 5
B
176 179parallel
Strand 6
B
199 202parallel
Strand 7
B
226 229parallel
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