Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JOC entry

There is 1 chain in PDB entry 9JOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 23LYS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9JOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 58Right-handed alpha
Helix 2
AA2
A
69 74Right-handed alpha
Helix 3
AA3
A
75 91Right-handed alpha
Helix 4
AA4
A
109 119Right-handed alpha
Helix 5
AA5
A
120 123Right-handed 310
Helix 6
AA6
A
146 162Right-handed alpha
Helix 7
AA7
A
173 179Right-handed alpha
Helix 8
AA8
A
179 188Right-handed alpha
Helix 9
AA9
A
188 210Right-handed alpha
Helix 10
AB1
A
230 237Right-handed 310
Helix 11
AB2
A
253 271Right-handed alpha
Helix 12
AB3
A
301 320Right-handed alpha
Helix 13
AB4
A
333 337Right-handed 310
Helix 14
AB5
A
344 348Right-handed 310
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There are 2 sheets in PDB entry 9JOC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
61 64parallel
Strand 3
A
95 101parallel
Strand 4
A
168 172parallel
Strand 5
A
214 218parallel
Strand 6
A
239 242parallel
Strand 7
A
274 280parallel
Strand 8
A
324 329parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
364 369anti-parallel
Strand 3
A
372 377anti-parallel
Strand 4
A
382 387anti-parallel
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