Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JOD entry

There are 7 chains in PDB entry 9JOD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 305
B	MET 1	LEU 305
C	MET 1	LEU 305
D	MET 1	LEU 305
E	MET 1	LEU 305
F	MET 1	LEU 305
G	MET 1	LEU 305

There are 59 helices in PDB entry 9JOD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	11	Right-handed alpha
Helix 2	AA2	A	29	32	Right-handed 310
Helix 3	AA3	A	87	92	Right-handed alpha
Helix 4	AA4	A	100	110	Right-handed alpha
Helix 5	AA5	A	111	123	Right-handed alpha
Helix 6	AA6	A	124	126	Right-handed 310
Helix 7	AA7	A	199	206	Right-handed alpha
Helix 8	AA8	A	222	224	Right-handed 310
Helix 9	AA9	A	234	247	Right-handed alpha
Helix 10	AB1	A	269	278	Right-handed alpha
Helix 11	AB2	B	5	11	Right-handed alpha
Helix 12	AB3	B	87	92	Right-handed alpha
Helix 13	AB4	B	101	123	Right-handed alpha
Helix 14	AB5	B	199	206	Right-handed alpha
Helix 15	AB6	B	222	224	Right-handed 310
Helix 16	AB7	B	234	247	Right-handed alpha
Helix 17	AB8	B	250	254	Right-handed 310
Helix 18	AB9	B	266	268	Right-handed 310
Helix 19	AC1	B	269	278	Right-handed alpha
Helix 20	AC2	C	5	10	Right-handed alpha
Helix 21	AC3	C	87	92	Right-handed alpha
Helix 22	AC4	C	100	110	Right-handed alpha
Helix 23	AC5	C	111	123	Right-handed alpha
Helix 24	AC6	C	199	206	Right-handed alpha
Helix 25	AC7	C	222	224	Right-handed 310
Helix 26	AC8	C	234	247	Right-handed alpha
Helix 27	AC9	C	266	268	Right-handed 310
Helix 28	AD1	C	269	278	Right-handed alpha
Helix 29	AD2	D	5	12	Right-handed alpha
Helix 30	AD3	D	87	92	Right-handed alpha
Helix 31	AD4	D	101	123	Right-handed alpha
Helix 32	AD5	D	124	126	Right-handed 310
Helix 33	AD6	D	199	206	Right-handed alpha
Helix 34	AD7	D	222	224	Right-handed 310
Helix 35	AD8	D	234	247	Right-handed alpha
Helix 36	AD9	D	270	278	Right-handed alpha
Helix 37	AE1	E	5	10	Right-handed alpha
Helix 38	AE2	E	29	32	Right-handed 310
Helix 39	AE3	E	87	92	Right-handed alpha
Helix 40	AE4	E	101	123	Right-handed alpha
Helix 41	AE5	E	199	204	Right-handed alpha
Helix 42	AE6	E	222	224	Right-handed 310
Helix 43	AE7	E	234	247	Right-handed alpha
Helix 44	AE8	E	269	278	Right-handed alpha
Helix 45	AE9	F	5	11	Right-handed alpha
Helix 46	AF1	F	87	91	Right-handed alpha
Helix 47	AF2	F	101	111	Right-handed alpha
Helix 48	AF3	F	111	123	Right-handed alpha
Helix 49	AF4	F	222	224	Right-handed 310
Helix 50	AF5	F	234	246	Right-handed alpha
Helix 51	AF6	F	266	268	Right-handed 310
Helix 52	AF7	F	269	278	Right-handed alpha
Helix 53	AF8	G	5	10	Right-handed alpha
Helix 54	AF9	G	87	92	Right-handed alpha
Helix 55	AG1	G	100	110	Right-handed alpha
Helix 56	AG2	G	111	123	Right-handed alpha
Helix 57	AG3	G	200	205	Right-handed alpha
Helix 58	AG4	G	234	246	Right-handed alpha
Helix 59	AG5	G	269	278	Right-handed alpha

There are 39 sheets in PDB entry 9JOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	181	194	parallel
Strand 3	A	207	220	anti-parallel
Strand 4	A	77	86	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	49	first strand
Strand 2	A	67	75	anti-parallel
Strand 3	B	2	3	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	142	first strand
Strand 2	A	153	155	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	160	first strand
Strand 2	A	226	230	parallel
Strand 3	A	169	172	anti-parallel
Strand 4	A	262	266	anti-parallel
Strand 5	A	298	302	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	16	first strand
Strand 2	C	43	49	parallel
Strand 3	C	69	75	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	181	194	parallel
Strand 3	B	207	220	anti-parallel
Strand 4	B	77	86	anti-parallel
Strand 5	C	56	57	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	181	194	parallel
Strand 3	B	207	220	anti-parallel
Strand 4	B	77	86	anti-parallel
Strand 5	C	64	65	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	75	first strand
Strand 2	B	43	49	anti-parallel
Strand 3	G	14	16	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	G	77	86	anti-parallel
Strand 3	B	64	65	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	G	77	86	anti-parallel
Strand 3	G	207	219	anti-parallel
Strand 4	G	181	194	anti-parallel
Strand 5	G	34	38	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	226	230	parallel
Strand 3	B	169	172	anti-parallel
Strand 4	B	262	265	anti-parallel
Strand 5	B	298	301	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	283	first strand
Strand 2	B	288	290	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	16	first strand
Strand 2	D	43	49	parallel
Strand 3	D	69	75	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	181	194	parallel
Strand 3	C	207	220	anti-parallel
Strand 4	C	77	86	anti-parallel
Strand 5	D	56	57	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	181	194	parallel
Strand 3	C	207	220	anti-parallel
Strand 4	C	77	86	anti-parallel
Strand 5	D	64	65	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	142	first strand
Strand 2	C	153	155	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	160	first strand
Strand 2	C	226	230	parallel
Strand 3	C	169	172	anti-parallel
Strand 4	C	262	265	anti-parallel
Strand 5	C	298	301	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	283	first strand
Strand 2	C	288	290	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	E	43	49	parallel
Strand 3	E	69	75	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	181	194	parallel
Strand 3	D	207	220	anti-parallel
Strand 4	D	77	86	anti-parallel
Strand 5	E	56	57	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	181	194	parallel
Strand 3	D	207	220	anti-parallel
Strand 4	D	77	86	anti-parallel
Strand 5	E	64	65	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	142	first strand
Strand 2	D	153	155	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	160	first strand
Strand 2	D	226	230	parallel
Strand 3	D	169	172	anti-parallel
Strand 4	D	262	266	anti-parallel
Strand 5	D	298	302	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	254	255	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	284	first strand
Strand 2	D	287	290	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	F	43	49	parallel
Strand 3	F	69	75	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	181	194	parallel
Strand 3	E	207	220	anti-parallel
Strand 4	E	77	86	anti-parallel
Strand 5	F	56	57	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	181	194	parallel
Strand 3	E	207	220	anti-parallel
Strand 4	E	77	86	anti-parallel
Strand 5	F	64	65	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	142	first strand
Strand 2	E	153	155	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	160	first strand
Strand 2	E	226	230	parallel
Strand 3	E	169	172	anti-parallel
Strand 4	E	262	265	anti-parallel
Strand 5	E	298	301	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	283	first strand
Strand 2	E	288	290	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	G	43	48	parallel
Strand 3	G	70	75	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	38	first strand
Strand 2	F	181	194	parallel
Strand 3	F	207	220	anti-parallel
Strand 4	F	78	86	anti-parallel
Strand 5	G	56	57	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	142	first strand
Strand 2	F	153	155	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	160	first strand
Strand 2	F	226	230	parallel
Strand 3	F	169	172	anti-parallel
Strand 4	F	262	265	anti-parallel
Strand 5	F	298	301	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	284	first strand
Strand 2	F	287	290	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	140	142	first strand
Strand 2	G	153	155	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	160	first strand
Strand 2	G	226	230	parallel
Strand 3	G	169	172	anti-parallel
Strand 4	G	262	265	anti-parallel
Strand 5	G	298	301	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	281	283	first strand
Strand 2	G	288	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JOD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOD