Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JOF entry

There are 2 chains in PDB entry 9JOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 19LYS 388
B
 ILE 23LYS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9JOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 58Right-handed alpha
Helix 2
AA2
A
69 74Right-handed alpha
Helix 3
AA3
A
75 91Right-handed alpha
Helix 4
AA4
A
109 119Right-handed alpha
Helix 5
AA5
A
120 123Right-handed 310
Helix 6
AA6
A
146 162Right-handed alpha
Helix 7
AA7
A
173 179Right-handed alpha
Helix 8
AA8
A
180 188Right-handed alpha
Helix 9
AA9
A
188 210Right-handed alpha
Helix 10
AB1
A
230 237Right-handed 310
Helix 11
AB2
A
253 271Right-handed alpha
Helix 12
AB3
A
281 286Right-handed alpha
Helix 13
AB4
A
302 320Right-handed alpha
Helix 14
AB5
A
333 337Right-handed 310
Helix 15
AB6
A
344 348Right-handed 310
Helix 16
AB7
B
49 58Right-handed alpha
Helix 17
AB8
B
69 74Right-handed alpha
Helix 18
AB9
B
75 91Right-handed alpha
Helix 19
AC1
B
109 119Right-handed alpha
Helix 20
AC2
B
120 123Right-handed 310
Helix 21
AC3
B
146 163Right-handed alpha
Helix 22
AC4
B
173 179Right-handed alpha
Helix 23
AC5
B
180 188Right-handed alpha
Helix 24
AC6
B
188 210Right-handed alpha
Helix 25
AC7
B
230 237Right-handed 310
Helix 26
AC8
B
253 271Right-handed alpha
Helix 27
AC9
B
282 286Right-handed 310
Helix 28
AD1
B
302 320Right-handed alpha
Helix 29
AD2
B
333 337Right-handed 310
Helix 30
AD3
B
344 348Right-handed 310
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There are 4 sheets in PDB entry 9JOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
61 68parallel
Strand 3
A
95 101parallel
Strand 4
A
168 172parallel
Strand 5
A
214 218parallel
Strand 6
A
239 242parallel
Strand 7
A
274 280parallel
Strand 8
A
324 329parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
364 369anti-parallel
Strand 3
A
372 377anti-parallel
Strand 4
A
382 387anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
61 68parallel
Strand 3
B
95 101parallel
Strand 4
B
168 172parallel
Strand 5
B
214 218parallel
Strand 6
B
239 242parallel
Strand 7
B
274 280parallel
Strand 8
B
324 329parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 361first strand
Strand 2
B
364 369anti-parallel
Strand 3
B
372 377anti-parallel
Strand 4
B
382 387anti-parallel
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