Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JOO entry

There is 1 chain in PDB entry 9JOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4LYS 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9JOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 42Right-handed alpha
Helix 2
AA2
A
52 55Right-handed 310
Helix 3
AA3
A
56 72Right-handed alpha
Helix 4
AA4
A
90 98Right-handed alpha
Helix 5
AA5
A
99 103Right-handed 310
Helix 6
AA6
A
125 141Right-handed alpha
Helix 7
AA7
A
152 158Right-handed alpha
Helix 8
AA8
A
160 166Right-handed alpha
Helix 9
AA9
A
166 189Right-handed alpha
Helix 10
AB1
A
230 247Right-handed alpha
Helix 11
AB2
A
264 270Right-handed alpha
Helix 12
AB3
A
271 282Right-handed alpha
Helix 13
AB4
A
283 294Right-handed alpha
Helix 14
AB5
A
316 320Right-handed 310
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There are 3 sheets in PDB entry 9JOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
44 47parallel
Strand 3
A
76 82parallel
Strand 4
A
147 151parallel
Strand 5
A
193 199parallel
Strand 6
A
217 220parallel
Strand 7
A
250 255parallel
Strand 8
A
298 302parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
118 120anti-parallel
Strand 3
A
113 115anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
336 341anti-parallel
Strand 3
A
344 349anti-parallel
Strand 4
A
354 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il