Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JOQ entry

There is 1 chain in PDB entry 9JOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6THR 832
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9JOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
109 113Right-handed 310
Helix 3
AA3
A
130 133Right-handed 310
Helix 4
AA4
A
136 140Right-handed 310
Helix 5
AA5
A
146 151Right-handed alpha
Helix 6
AA6
A
162 170Right-handed alpha
Helix 7
AA7
A
170 178Right-handed alpha
Helix 8
AA8
A
214 228Right-handed alpha
Helix 9
AA9
A
275 290Right-handed alpha
Helix 10
AB1
A
326 340Right-handed alpha
Helix 11
AB2
A
363 368Right-handed alpha
Helix 12
AB3
A
401 415Right-handed alpha
Helix 13
AB4
A
429 446Right-handed alpha
Helix 14
AB5
A
448 455Right-handed alpha
Helix 15
AB6
A
481 502Right-handed alpha
Helix 16
AB7
A
524 532Right-handed alpha
Helix 17
AB8
A
540 542Right-handed 310
Helix 18
AB9
A
543 559Right-handed alpha
Helix 19
AC1
A
579 583Right-handed 310
Helix 20
AC2
A
596 600Right-handed 310
Helix 21
AC3
A
601 602Right-handed 310
Helix 22
AC4
A
603 611Right-handed alpha
Helix 23
AC5
A
619 624Right-handed alpha
Helix 24
AC6
A
646 653Right-handed alpha
Helix 25
AC7
A
657 662Right-handed 310
Helix 26
AC8
A
673 679Right-handed alpha
Helix 27
AC9
A
687 691Right-handed 310
Helix 28
AD1
A
705 714Right-handed alpha
Helix 29
AD2
A
716 726Right-handed alpha
Helix 30
AD3
A
736 754Right-handed alpha
Helix 31
AD4
A
754 763Right-handed alpha
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There are 9 sheets in PDB entry 9JOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 26first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
63 64anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 76first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
54 58anti-parallel
Strand 4
A
118 120anti-parallel
Strand 5
A
127 128anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 202first strand
Strand 2
A
298 307anti-parallel
Strand 3
A
260 264anti-parallel
Strand 4
A
268 273anti-parallel
Strand 5
A
245 250parallel
Strand 6
A
207 210parallel
Strand 7
A
233 236parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 319first strand
Strand 2
A
344 348parallel
Strand 3
A
418 425parallel
Strand 4
A
508 512parallel
Strand 5
A
562 566parallel
Strand 6
A
588 592parallel
Strand 7
A
614 617parallel
Strand 8
A
693 696parallel
Strand 9
A
313 319parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
382 383parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 573first strand
Strand 2
A
576 577anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 776first strand
Strand 2
A
779 783anti-parallel
Strand 3
A
808 809anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 803first strand
Strand 2
A
790 794anti-parallel
Strand 3
A
815 821anti-parallel
Strand 4
A
824 825anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 803first strand
Strand 2
A
790 794anti-parallel
Strand 3
A
815 821anti-parallel
Strand 4
A
829 831anti-parallel
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