Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JOR entry

There are 6 chains in PDB entry 9JOR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	LYS 442
A	LYS 393	GLN 676
D	MET 1	LYS 442
B	LYS 393	GLN 676
E	T 2	A 25
F	A 2	T 25

There are 61 helices in PDB entry 9JOR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	8	26	Right-handed alpha
Helix 2	AA2	C	37	52	Right-handed alpha
Helix 3	AA3	C	61	65	Right-handed alpha
Helix 4	AA4	C	67	72	Right-handed alpha
Helix 5	AA5	C	76	86	Right-handed alpha
Helix 6	AA6	C	123	129	Right-handed alpha
Helix 7	AA7	C	156	161	Right-handed alpha
Helix 8	AA8	C	177	191	Right-handed alpha
Helix 9	AA9	C	240	254	Right-handed alpha
Helix 10	AB1	C	283	295	Right-handed alpha
Helix 11	AB2	C	323	365	Right-handed alpha
Helix 12	AB3	C	374	381	Right-handed alpha
Helix 13	AB4	C	391	397	Right-handed alpha
Helix 14	AB5	C	404	427	Right-handed alpha
Helix 15	AB6	C	429	440	Right-handed alpha
Helix 16	AB7	A	416	420	Right-handed 310
Helix 17	AB8	A	422	427	Right-handed alpha
Helix 18	AB9	A	451	454	Right-handed 310
Helix 19	AC1	A	455	466	Right-handed alpha
Helix 20	AC2	A	509	515	Right-handed alpha
Helix 21	AC3	A	523	527	Right-handed 310
Helix 22	AC4	A	528	535	Right-handed alpha
Helix 23	AC5	A	559	565	Right-handed alpha
Helix 24	AC6	A	566	575	Right-handed alpha
Helix 25	AC7	A	607	612	Right-handed alpha
Helix 26	AC8	A	613	618	Right-handed 310
Helix 27	AC9	A	635	643	Right-handed alpha
Helix 28	AD1	A	654	663	Right-handed alpha
Helix 29	AD2	A	667	675	Right-handed alpha
Helix 30	AD3	D	8	26	Right-handed alpha
Helix 31	AD4	D	39	51	Right-handed alpha
Helix 32	AD5	D	61	65	Right-handed alpha
Helix 33	AD6	D	76	87	Right-handed alpha
Helix 34	AD7	D	123	130	Right-handed alpha
Helix 35	AD8	D	156	161	Right-handed alpha
Helix 36	AD9	D	177	191	Right-handed alpha
Helix 37	AE1	D	240	245	Right-handed alpha
Helix 38	AE2	D	248	253	Right-handed alpha
Helix 39	AE3	D	283	295	Right-handed alpha
Helix 40	AE4	D	319	365	Right-handed alpha
Helix 41	AE5	D	374	385	Right-handed alpha
Helix 42	AE6	D	388	391	Right-handed 310
Helix 43	AE7	D	392	398	Right-handed alpha
Helix 44	AE8	D	399	403	Right-handed 310
Helix 45	AE9	D	407	428	Right-handed alpha
Helix 46	AF1	D	429	439	Right-handed alpha
Helix 47	AF2	B	416	420	Right-handed 310
Helix 48	AF3	B	423	427	Right-handed 310
Helix 49	AF4	B	448	453	Right-handed alpha
Helix 50	AF5	B	455	466	Right-handed alpha
Helix 51	AF6	B	509	515	Right-handed alpha
Helix 52	AF7	B	523	527	Right-handed 310
Helix 53	AF8	B	528	534	Right-handed alpha
Helix 54	AF9	B	559	565	Right-handed alpha
Helix 55	AG1	B	566	575	Right-handed alpha
Helix 56	AG2	B	577	583	Right-handed alpha
Helix 57	AG3	B	607	613	Right-handed alpha
Helix 58	AG4	B	628	632	Right-handed 310
Helix 59	AG5	B	633	643	Right-handed alpha
Helix 60	AG6	B	654	664	Right-handed alpha
Helix 61	AG7	B	666	675	Right-handed alpha

There are 22 sheets in PDB entry 9JOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	A	647	650	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	119	122	anti-parallel
Strand 3	C	98	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	151	152	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	170	173	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	211	first strand
Strand 2	C	214	218	anti-parallel
Strand 3	C	298	300	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	228	231	anti-parallel
Strand 3	C	271	274	anti-parallel
Strand 4	C	257	260	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	C	314	316	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	542	545	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	495	first strand
Strand 2	A	482	487	anti-parallel
Strand 3	A	520	522	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	508	first strand
Strand 2	A	498	502	anti-parallel
Strand 3	A	538	540	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	605	first strand
Strand 2	A	594	596	anti-parallel
Strand 3	A	624	625	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	B	645	650	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	119	122	anti-parallel
Strand 3	D	98	99	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	170	173	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	218	first strand
Strand 2	D	298	302	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	230	first strand
Strand 2	D	271	274	anti-parallel
Strand 3	D	257	260	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	308	first strand
Strand 2	D	314	316	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	436	first strand
Strand 2	B	411	414	parallel
Strand 3	B	552	554	parallel
Strand 4	B	586	588	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	476	first strand
Strand 2	B	542	545	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	495	first strand
Strand 2	B	482	487	anti-parallel
Strand 3	B	520	522	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	508	first strand
Strand 2	B	498	502	anti-parallel
Strand 3	B	538	540	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	598	first strand
Strand 2	B	601	605	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JOR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOR