Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JOS entry

There is 1 chain in PDB entry 9JOS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ARG 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9JOS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 52Right-handed alpha
Helix 2
AA2
A
62 67Right-handed alpha
Helix 3
AA3
A
68 84Right-handed alpha
Helix 4
AA4
A
102 106Right-handed 310
Helix 5
AA5
A
112 115Right-handed 310
Helix 6
AA6
A
116 121Right-handed alpha
Helix 7
AA7
A
145 164Right-handed alpha
Helix 8
AA8
A
176 182Right-handed 310
Helix 9
AA9
A
183 203Right-handed alpha
Helix 10
AB1
A
215 219Right-handed 310
Helix 11
AB2
A
221 225Right-handed 310
Helix 12
AB3
A
235 238Right-handed 310
Helix 13
AB4
A
239 256Right-handed alpha
Helix 14
AB5
A
267 269Right-handed 310
Helix 15
AB6
A
285 304Right-handed alpha
Helix 16
AB7
A
326 331Right-handed 310
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There are 3 sheets in PDB entry 9JOS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
54 57parallel
Strand 3
A
88 94parallel
Strand 4
A
167 171parallel
Strand 5
A
207 211parallel
Strand 6
A
227 230parallel
Strand 7
A
259 265parallel
Strand 8
A
308 313parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
138 139anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
349 354anti-parallel
Strand 3
A
357 362anti-parallel
Strand 4
A
367 372anti-parallel
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