Analysis of interatomic Contacts of Structural Units in PDB entry:
9JOU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JOU entry

There are 5 chains in PDB entry 9JOU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11LYS 240
B
 VAL 11LYS 240
C
 VAL 11LYS 240
D
 VAL 11LYS 240
E
 VAL 11LYS 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9JOU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 41Right-handed alpha
Helix 2
AA2
A
42 44Right-handed 310
Helix 3
AA3
A
48 77Right-handed alpha
Helix 4
AA4
A
80 83Right-handed 310
Helix 5
AA5
A
84 103Right-handed alpha
Helix 6
AA6
A
109 132Right-handed alpha
Helix 7
AA7
A
137 159Right-handed alpha
Helix 8
AA8
A
159 168Right-handed alpha
Helix 9
AA9
A
170 185Right-handed alpha
Helix 10
AB1
A
188 198Right-handed alpha
Helix 11
AB2
A
211 239Right-handed alpha
Helix 12
AB3
B
17 41Right-handed alpha
Helix 13
AB4
B
42 44Right-handed 310
Helix 14
AB5
B
45 77Right-handed alpha
Helix 15
AB6
B
80 83Right-handed 310
Helix 16
AB7
B
84 103Right-handed alpha
Helix 17
AB8
B
109 133Right-handed alpha
Helix 18
AB9
B
137 159Right-handed alpha
Helix 19
AC1
B
159 169Right-handed alpha
Helix 20
AC2
B
170 185Right-handed alpha
Helix 21
AC3
B
188 198Right-handed alpha
Helix 22
AC4
B
211 239Right-handed alpha
Helix 23
AC5
C
17 41Right-handed alpha
Helix 24
AC6
C
42 44Right-handed 310
Helix 25
AC7
C
48 77Right-handed alpha
Helix 26
AC8
C
80 83Right-handed 310
Helix 27
AC9
C
84 103Right-handed alpha
Helix 28
AD1
C
109 133Right-handed alpha
Helix 29
AD2
C
137 159Right-handed alpha
Helix 30
AD3
C
159 169Right-handed alpha
Helix 31
AD4
C
170 185Right-handed alpha
Helix 32
AD5
C
188 198Right-handed alpha
Helix 33
AD6
C
210 239Right-handed alpha
Helix 34
AD7
D
17 41Right-handed alpha
Helix 35
AD8
D
42 44Right-handed 310
Helix 36
AD9
D
45 77Right-handed alpha
Helix 37
AE1
D
80 83Right-handed 310
Helix 38
AE2
D
84 103Right-handed alpha
Helix 39
AE3
D
109 132Right-handed alpha
Helix 40
AE4
D
137 159Right-handed alpha
Helix 41
AE5
D
159 169Right-handed alpha
Helix 42
AE6
D
170 185Right-handed alpha
Helix 43
AE7
D
188 198Right-handed alpha
Helix 44
AE8
D
210 239Right-handed alpha
Helix 45
AE9
E
17 41Right-handed alpha
Helix 46
AF1
E
42 44Right-handed 310
Helix 47
AF2
E
48 77Right-handed alpha
Helix 48
AF3
E
80 103Right-handed alpha
Helix 49
AF4
E
109 132Right-handed alpha
Helix 50
AF5
E
137 159Right-handed alpha
Helix 51
AF6
E
159 169Right-handed alpha
Helix 52
AF7
E
170 185Right-handed alpha
Helix 53
AF8
E
188 198Right-handed alpha
Helix 54
AF9
E
211 239Right-handed alpha
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There are no sheets in PDB entry 9JOU
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il