Analysis of interatomic Contacts of Structural Units in PDB entry:
9JP0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JP0 entry

There are 4 chains in PDB entry 9JP0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	PHE 60	ARG 371
B	PHE 60	ARG 371
C	PHE 60	ARG 371
F	PHE 60	PHE 355

There are103 helices in PDB entry 9JP0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	62	67	Right-handed alpha
Helix 2	AA2	E	69	82	Right-handed alpha
Helix 3	AA3	E	83	88	Right-handed alpha
Helix 4	AA4	E	100	109	Right-handed alpha
Helix 5	AA5	E	121	132	Right-handed alpha
Helix 6	AA6	E	173	182	Right-handed alpha
Helix 7	AA7	E	206	213	Right-handed alpha
Helix 8	AA8	E	214	217	Right-handed 310
Helix 9	AA9	E	224	226	Right-handed 310
Helix 10	AB1	E	227	234	Right-handed alpha
Helix 11	AB2	E	241	245	Right-handed 310
Helix 12	AB3	E	256	260	Right-handed 310
Helix 13	AB4	E	261	265	Right-handed 310
Helix 14	AB5	B	62	67	Right-handed alpha
Helix 15	AB6	B	70	81	Right-handed alpha
Helix 16	AB7	B	103	108	Right-handed alpha
Helix 17	AB8	B	122	133	Right-handed alpha
Helix 18	AB9	B	173	183	Right-handed alpha
Helix 19	AC1	B	208	213	Right-handed alpha
Helix 20	AC2	B	225	234	Right-handed alpha
Helix 21	AC3	B	241	245	Right-handed 310
Helix 22	AC4	C	69	82	Right-handed alpha
Helix 23	AC5	C	83	88	Right-handed alpha
Helix 24	AC6	C	103	108	Right-handed alpha
Helix 25	AC7	C	124	132	Right-handed alpha
Helix 26	AC8	C	133	135	Right-handed 310
Helix 27	AC9	C	165	169	Right-handed 310
Helix 28	AD1	C	173	184	Right-handed alpha
Helix 29	AD2	C	206	213	Right-handed alpha
Helix 30	AD3	C	214	217	Right-handed 310
Helix 31	AD4	C	225	234	Right-handed alpha
Helix 32	AD5	C	241	245	Right-handed 310
Helix 33	AD6	C	258	260	Right-handed 310
Helix 34	AD7	F	62	67	Right-handed alpha
Helix 35	AD8	F	69	83	Right-handed alpha
Helix 36	AD9	F	84	88	Right-handed 310
Helix 37	AE1	F	100	108	Right-handed alpha
Helix 38	AE2	F	121	133	Right-handed alpha
Helix 39	AE3	F	145	149	Right-handed 310
Helix 40	AE4	F	165	169	Right-handed 310
Helix 41	AE5	F	173	185	Right-handed alpha
Helix 42	AE6	F	206	213	Right-handed alpha
Helix 43	AE7	F	218	222	Right-handed 310
Helix 44	AE8	F	227	232	Right-handed alpha
Helix 45	AE9	F	261	266	Right-handed 310
Helix 46	AF1	G	63	67	Right-handed 310
Helix 47	AF2	G	73	83	Right-handed alpha
Helix 48	AF3	G	121	133	Right-handed alpha
Helix 49	AF4	G	145	149	Right-handed 310
Helix 50	AF5	G	165	169	Right-handed 310
Helix 51	AF6	G	173	184	Right-handed alpha
Helix 52	AF7	G	206	213	Right-handed alpha
Helix 53	AF8	G	214	218	Right-handed 310
Helix 54	AF9	G	225	234	Right-handed alpha
Helix 55	AG1	G	241	245	Right-handed 310
Helix 56	AG2	G	261	266	Right-handed 310
Helix 57	AG3	H	62	67	Right-handed alpha
Helix 58	AG4	H	71	82	Right-handed alpha
Helix 59	AG5	H	100	110	Right-handed alpha
Helix 60	AG6	H	122	133	Right-handed alpha
Helix 61	AG7	H	165	169	Right-handed 310
Helix 62	AG8	H	173	184	Right-handed alpha
Helix 63	AG9	H	208	213	Right-handed alpha
Helix 64	AH1	H	225	233	Right-handed alpha
Helix 65	AH2	H	241	245	Right-handed 310
Helix 66	AH3	D	72	82	Right-handed alpha
Helix 67	AH4	D	83	88	Right-handed 310
Helix 68	AH5	D	102	108	Right-handed alpha
Helix 69	AH6	D	121	133	Right-handed alpha
Helix 70	AH7	D	145	149	Right-handed 310
Helix 71	AH8	D	165	169	Right-handed 310
Helix 72	AH9	D	173	184	Right-handed alpha
Helix 73	AI1	D	208	213	Right-handed alpha
Helix 74	AI2	D	224	232	Right-handed alpha
Helix 75	AI3	D	258	260	Right-handed 310
Helix 76	AI4	A	71	82	Right-handed alpha
Helix 77	AI5	A	100	108	Right-handed alpha
Helix 78	AI6	A	122	133	Right-handed alpha
Helix 79	AI7	A	165	169	Right-handed 310
Helix 80	AI8	A	173	184	Right-handed alpha
Helix 81	AI9	A	206	213	Right-handed alpha
Helix 82	AJ1	A	224	231	Right-handed alpha
Helix 83	AJ2	A	241	245	Right-handed 310
Helix 84	AJ3	A	261	266	Right-handed 310
Helix 85	AJ4	I	70	82	Right-handed alpha
Helix 86	AJ5	I	97	100	Right-handed 310
Helix 87	AJ6	I	101	108	Right-handed alpha
Helix 88	AJ7	I	121	133	Right-handed alpha
Helix 89	AJ8	I	165	169	Right-handed 310
Helix 90	AJ9	I	173	185	Right-handed alpha
Helix 91	AK1	I	208	213	Right-handed alpha
Helix 92	AK2	I	218	222	Right-handed 310
Helix 93	AK3	I	224	234	Right-handed alpha
Helix 94	AK4	J	62	67	Right-handed alpha
Helix 95	AK5	J	71	82	Right-handed alpha
Helix 96	AK6	J	102	108	Right-handed alpha
Helix 97	AK7	J	121	133	Right-handed alpha
Helix 98	AK8	J	165	169	Right-handed 310
Helix 99	AK9	J	173	183	Right-handed alpha
Helix 100	AL1	J	213	218	Right-handed 310
Helix 101	AL2	J	226	234	Right-handed alpha
Helix 102	AL3	J	241	245	Right-handed 310
Helix 103	AL4	J	261	266	Right-handed 310

There are 45 sheets in PDB entry 9JP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	143	first strand
Strand 2	E	113	118	parallel
Strand 3	E	91	94	parallel
Strand 4	E	156	160	parallel
Strand 5	E	185	191	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	237	first strand
Strand 2	E	315	325	anti-parallel
Strand 3	E	279	288	anti-parallel
Strand 4	E	196	203	anti-parallel
Strand 5	E	250	255	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	274	first strand
Strand 2	E	330	338	anti-parallel
Strand 3	E	347	352	anti-parallel
Strand 4	E	365	370	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	292	first strand
Strand 2	E	299	300	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	95	parallel
Strand 4	B	156	160	parallel
Strand 5	B	185	191	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	256	first strand
Strand 2	B	195	203	anti-parallel
Strand 3	B	283	292	anti-parallel
Strand 4	B	299	302	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	315	316	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	270	first strand
Strand 2	B	334	339	anti-parallel
Strand 3	B	347	356	anti-parallel
Strand 4	B	330	332	anti-parallel
Strand 5	B	273	274	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	270	first strand
Strand 2	B	334	339	anti-parallel
Strand 3	B	347	356	anti-parallel
Strand 4	B	361	370	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	113	118	parallel
Strand 3	C	91	94	parallel
Strand 4	C	158	160	parallel
Strand 5	C	190	191	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	315	318	anti-parallel
Strand 3	C	283	288	anti-parallel
Strand 4	C	195	203	anti-parallel
Strand 5	C	250	256	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	274	first strand
Strand 2	C	330	337	anti-parallel
Strand 3	C	351	355	anti-parallel
Strand 4	C	362	366	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	143	first strand
Strand 2	F	114	118	parallel
Strand 3	F	92	95	parallel
Strand 4	F	158	160	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	238	first strand
Strand 2	F	314	318	anti-parallel
Strand 3	F	283	291	anti-parallel
Strand 4	F	196	203	anti-parallel
Strand 5	F	251	255	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	238	first strand
Strand 2	F	314	318	anti-parallel
Strand 3	F	283	291	anti-parallel
Strand 4	F	300	302	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	274	first strand
Strand 2	F	330	339	anti-parallel
Strand 3	F	347	356	anti-parallel
Strand 4	F	361	369	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	143	first strand
Strand 2	G	113	118	parallel
Strand 3	G	91	93	parallel
Strand 4	G	158	159	parallel
Strand 5	G	190	191	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	238	first strand
Strand 2	G	314	324	anti-parallel
Strand 3	G	280	292	anti-parallel
Strand 4	G	196	203	anti-parallel
Strand 5	G	250	255	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	238	first strand
Strand 2	G	314	324	anti-parallel
Strand 3	G	280	292	anti-parallel
Strand 4	G	299	300	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	267	273	first strand
Strand 2	G	331	339	anti-parallel
Strand 3	G	347	355	anti-parallel
Strand 4	G	362	370	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	91	95	first strand
Strand 2	H	113	118	parallel
Strand 3	H	142	143	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	203	first strand
Strand 2	H	283	290	anti-parallel
Strand 3	H	301	302	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	203	first strand
Strand 2	H	283	290	anti-parallel
Strand 3	H	315	317	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	267	270	first strand
Strand 2	H	334	339	anti-parallel
Strand 3	H	347	351	anti-parallel
Strand 4	H	367	370	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	279	281	first strand
Strand 2	H	323	325	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	353	355	first strand
Strand 2	H	362	364	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	143	first strand
Strand 2	D	113	118	parallel
Strand 3	D	91	94	parallel
Strand 4	D	156	159	parallel
Strand 5	D	185	191	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	315	318	anti-parallel
Strand 3	D	283	292	anti-parallel
Strand 4	D	195	203	anti-parallel
Strand 5	D	245	256	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	315	318	anti-parallel
Strand 3	D	283	292	anti-parallel
Strand 4	D	299	302	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	347	356	anti-parallel
Strand 3	D	337	339	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	347	356	anti-parallel
Strand 3	D	361	370	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	143	first strand
Strand 2	A	113	118	parallel
Strand 3	A	91	95	parallel
Strand 4	A	158	160	parallel
Strand 5	A	190	191	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	203	first strand
Strand 2	A	279	287	anti-parallel
Strand 3	A	314	325	anti-parallel
Strand 4	A	236	238	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	270	first strand
Strand 2	A	330	339	anti-parallel
Strand 3	A	273	274	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	270	first strand
Strand 2	A	330	339	anti-parallel
Strand 3	A	347	355	anti-parallel
Strand 4	A	363	370	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	292	first strand
Strand 2	A	299	302	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	140	143	first strand
Strand 2	I	115	118	parallel
Strand 3	I	92	95	parallel
Strand 4	I	158	160	parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	236	238	first strand
Strand 2	I	314	318	anti-parallel
Strand 3	I	283	292	anti-parallel
Strand 4	I	196	203	anti-parallel
Strand 5	I	250	255	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	236	238	first strand
Strand 2	I	314	318	anti-parallel
Strand 3	I	283	292	anti-parallel
Strand 4	I	299	302	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	273	274	first strand
Strand 2	I	330	339	anti-parallel
Strand 3	I	347	356	anti-parallel
Strand 4	I	361	370	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	92	94	first strand
Strand 2	J	114	118	parallel
Strand 3	J	141	143	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	156	158	first strand
Strand 2	J	185	190	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	193	195	first strand
Strand 2	J	291	292	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	199	203	first strand
Strand 2	J	279	287	anti-parallel
Strand 3	J	315	325	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	267	274	first strand
Strand 2	J	330	337	anti-parallel
Strand 3	J	347	354	anti-parallel
Strand 4	J	365	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JP0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JP0