Analysis of interatomic Contacts of Structural Units in PDB entry:
9JP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JP5 entry

There are 8 chains in PDB entry 9JP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 459
B	TYR 21	LEU 208
C	MET 1	THR 446
D	TYR 21	LEU 208
E	MET 1	THR 446
F	GLU 17	LEU 208
G	MET 1	LEU 455
H	TYR 21	LEU 208

There are 89 helices in PDB entry 9JP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	6	Right-handed 310
Helix 2	AA2	A	12	15	Right-handed 310
Helix 3	AA3	A	16	26	Right-handed alpha
Helix 4	AA4	A	26	31	Right-handed alpha
Helix 5	AA5	A	39	41	Right-handed 310
Helix 6	AA6	A	118	122	Right-handed 310
Helix 7	AA7	A	153	159	Right-handed alpha
Helix 8	AA8	A	161	170	Right-handed alpha
Helix 9	AA9	A	189	200	Right-handed alpha
Helix 10	AB1	A	203	208	Right-handed alpha
Helix 11	AB2	A	208	214	Right-handed alpha
Helix 12	AB3	A	247	255	Right-handed alpha
Helix 13	AB4	A	258	267	Right-handed alpha
Helix 14	AB5	A	270	279	Right-handed alpha
Helix 15	AB6	A	338	353	Right-handed alpha
Helix 16	AB7	A	359	375	Right-handed alpha
Helix 17	AB8	A	418	433	Right-handed alpha
Helix 18	AB9	B	45	64	Right-handed alpha
Helix 19	AC1	B	66	72	Right-handed alpha
Helix 20	AC2	B	106	119	Right-handed alpha
Helix 21	AC3	B	122	126	Right-handed 310
Helix 22	AC4	C	3	6	Right-handed 310
Helix 23	AC5	C	12	15	Right-handed 310
Helix 24	AC6	C	16	26	Right-handed alpha
Helix 25	AC7	C	27	30	Right-handed 310
Helix 26	AC8	C	39	41	Right-handed 310
Helix 27	AC9	C	118	122	Right-handed 310
Helix 28	AD1	C	153	159	Right-handed alpha
Helix 29	AD2	C	161	170	Right-handed alpha
Helix 30	AD3	C	189	200	Right-handed alpha
Helix 31	AD4	C	203	208	Right-handed alpha
Helix 32	AD5	C	208	214	Right-handed alpha
Helix 33	AD6	C	247	255	Right-handed alpha
Helix 34	AD7	C	258	269	Right-handed alpha
Helix 35	AD8	C	270	279	Right-handed alpha
Helix 36	AD9	C	338	353	Right-handed alpha
Helix 37	AE1	C	359	375	Right-handed alpha
Helix 38	AE2	C	378	380	Right-handed 310
Helix 39	AE3	C	418	433	Right-handed alpha
Helix 40	AE4	D	45	64	Right-handed alpha
Helix 41	AE5	D	66	72	Right-handed alpha
Helix 42	AE6	D	106	119	Right-handed alpha
Helix 43	AE7	D	122	126	Right-handed 310
Helix 44	AE8	E	2	6	Right-handed alpha
Helix 45	AE9	E	12	15	Right-handed 310
Helix 46	AF1	E	16	26	Right-handed alpha
Helix 47	AF2	E	26	31	Right-handed alpha
Helix 48	AF3	E	39	41	Right-handed 310
Helix 49	AF4	E	112	118	Right-handed alpha
Helix 50	AF5	E	119	122	Right-handed 310
Helix 51	AF6	E	153	159	Right-handed alpha
Helix 52	AF7	E	161	170	Right-handed alpha
Helix 53	AF8	E	189	200	Right-handed alpha
Helix 54	AF9	E	203	208	Right-handed alpha
Helix 55	AG1	E	208	214	Right-handed alpha
Helix 56	AG2	E	247	255	Right-handed alpha
Helix 57	AG3	E	258	269	Right-handed alpha
Helix 58	AG4	E	270	279	Right-handed alpha
Helix 59	AG5	E	338	353	Right-handed alpha
Helix 60	AG6	E	359	375	Right-handed alpha
Helix 61	AG7	E	378	380	Right-handed 310
Helix 62	AG8	E	418	434	Right-handed alpha
Helix 63	AG9	F	20	25	Right-handed alpha
Helix 64	AH1	F	45	65	Right-handed alpha
Helix 65	AH2	F	66	72	Right-handed alpha
Helix 66	AH3	F	106	119	Right-handed alpha
Helix 67	AH4	F	122	126	Right-handed 310
Helix 68	AH5	G	2	6	Right-handed alpha
Helix 69	AH6	G	12	15	Right-handed 310
Helix 70	AH7	G	16	26	Right-handed alpha
Helix 71	AH8	G	26	31	Right-handed alpha
Helix 72	AH9	G	39	41	Right-handed 310
Helix 73	AI1	G	118	122	Right-handed 310
Helix 74	AI2	G	153	159	Right-handed alpha
Helix 75	AI3	G	161	170	Right-handed alpha
Helix 76	AI4	G	189	200	Right-handed alpha
Helix 77	AI5	G	203	214	Right-handed alpha
Helix 78	AI6	G	247	255	Right-handed alpha
Helix 79	AI7	G	258	267	Right-handed alpha
Helix 80	AI8	G	270	279	Right-handed alpha
Helix 81	AI9	G	338	353	Right-handed alpha
Helix 82	AJ1	G	359	375	Right-handed alpha
Helix 83	AJ2	G	378	381	Right-handed 310
Helix 84	AJ3	G	418	433	Right-handed alpha
Helix 85	AJ4	H	45	64	Right-handed alpha
Helix 86	AJ5	H	66	72	Right-handed alpha
Helix 87	AJ6	H	89	93	Right-handed 310
Helix 88	AJ7	H	106	119	Right-handed alpha
Helix 89	AJ8	H	122	126	Right-handed 310

There are 24 sheets in PDB entry 9JP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	C	442	443	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	142	145	anti-parallel
Strand 3	A	136	139	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	55	61	anti-parallel
Strand 3	A	46	52	anti-parallel
Strand 4	A	86	88	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	A	100	102	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	186	first strand
Strand 2	A	324	334	anti-parallel
Strand 3	A	311	321	anti-parallel
Strand 4	A	293	298	anti-parallel
Strand 5	A	282	289	anti-parallel
Strand 6	A	236	242	anti-parallel
Strand 7	A	229	233	anti-parallel
Strand 8	A	411	414	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	E	382	385	parallel
Strand 3	E	8	10	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	130	143	anti-parallel
Strand 3	B	148	160	anti-parallel
Strand 4	B	168	180	anti-parallel
Strand 5	B	185	194	anti-parallel
Strand 6	B	74	85	parallel
Strand 7	B	96	105	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	E	442	443	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	142	146	anti-parallel
Strand 3	C	136	139	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	55	61	anti-parallel
Strand 3	C	46	52	anti-parallel
Strand 4	C	86	88	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	100	102	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	186	first strand
Strand 2	C	324	334	anti-parallel
Strand 3	C	311	321	anti-parallel
Strand 4	C	293	298	anti-parallel
Strand 5	C	282	289	anti-parallel
Strand 6	C	236	242	anti-parallel
Strand 7	C	229	233	anti-parallel
Strand 8	C	411	414	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	130	143	anti-parallel
Strand 3	D	148	160	anti-parallel
Strand 4	D	168	180	anti-parallel
Strand 5	D	185	194	anti-parallel
Strand 6	D	74	85	parallel
Strand 7	D	96	105	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	37	first strand
Strand 2	E	142	146	anti-parallel
Strand 3	E	136	139	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	55	61	anti-parallel
Strand 3	E	46	52	anti-parallel
Strand 4	E	86	88	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	100	102	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	186	first strand
Strand 2	E	324	334	anti-parallel
Strand 3	E	311	321	anti-parallel
Strand 4	E	293	298	anti-parallel
Strand 5	E	282	289	anti-parallel
Strand 6	E	236	242	anti-parallel
Strand 7	E	229	233	anti-parallel
Strand 8	E	411	414	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	37	first strand
Strand 2	F	130	143	anti-parallel
Strand 3	F	148	160	anti-parallel
Strand 4	F	168	180	anti-parallel
Strand 5	F	185	194	anti-parallel
Strand 6	F	74	85	parallel
Strand 7	F	96	105	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	10	first strand
Strand 2	G	383	385	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	37	first strand
Strand 2	G	142	145	anti-parallel
Strand 3	G	136	139	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	71	first strand
Strand 2	G	55	61	anti-parallel
Strand 3	G	46	52	anti-parallel
Strand 4	G	86	88	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	100	102	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	186	first strand
Strand 2	G	324	334	anti-parallel
Strand 3	G	311	321	anti-parallel
Strand 4	G	293	298	anti-parallel
Strand 5	G	282	289	anti-parallel
Strand 6	G	236	242	anti-parallel
Strand 7	G	229	233	anti-parallel
Strand 8	G	411	414	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	37	first strand
Strand 2	H	130	143	anti-parallel
Strand 3	H	148	160	anti-parallel
Strand 4	H	168	180	anti-parallel
Strand 5	H	185	194	anti-parallel
Strand 6	H	74	85	parallel
Strand 7	H	96	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JP5