Analysis of interatomic Contacts of Structural Units in PDB entry:
9JP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JP7 entry

There are 4 chains in PDB entry 9JP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 329
B
 ASN 2ILE 329
C
 MET 1GLU 325
D
 MET 1ARG 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 9JP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
37 49Right-handed alpha
Helix 3
AA3
A
58 67Right-handed alpha
Helix 4
AA4
A
84 86Right-handed 310
Helix 5
AA5
A
97 102Right-handed 310
Helix 6
AA6
A
113 128Right-handed alpha
Helix 7
AA7
A
130 133Right-handed 310
Helix 8
AA8
A
168 175Right-handed alpha
Helix 9
AA9
A
188 193Right-handed alpha
Helix 10
AB1
A
203 216Right-handed alpha
Helix 11
AB2
A
228 234Right-handed alpha
Helix 12
AB3
A
236 257Right-handed alpha
Helix 13
AB4
A
268 281Right-handed alpha
Helix 14
AB5
A
289 291Right-handed 310
Helix 15
AB6
A
292 306Right-handed alpha
Helix 16
AB7
A
314 318Right-handed 310
Helix 17
AB8
A
320 324Right-handed 310
Helix 18
AB9
B
16 21Right-handed alpha
Helix 19
AC1
B
37 49Right-handed alpha
Helix 20
AC2
B
58 67Right-handed alpha
Helix 21
AC3
B
84 86Right-handed 310
Helix 22
AC4
B
97 102Right-handed 310
Helix 23
AC5
B
113 128Right-handed alpha
Helix 24
AC6
B
130 133Right-handed 310
Helix 25
AC7
B
168 175Right-handed alpha
Helix 26
AC8
B
188 193Right-handed alpha
Helix 27
AC9
B
203 216Right-handed alpha
Helix 28
AD1
B
228 234Right-handed alpha
Helix 29
AD2
B
236 257Right-handed alpha
Helix 30
AD3
B
268 281Right-handed alpha
Helix 31
AD4
B
289 291Right-handed 310
Helix 32
AD5
B
292 306Right-handed alpha
Helix 33
AD6
B
314 318Right-handed 310
Helix 34
AD7
B
320 324Right-handed 310
Helix 35
AD8
C
16 21Right-handed alpha
Helix 36
AD9
C
37 49Right-handed alpha
Helix 37
AE1
C
58 67Right-handed alpha
Helix 38
AE2
C
84 86Right-handed 310
Helix 39
AE3
C
97 102Right-handed 310
Helix 40
AE4
C
113 128Right-handed alpha
Helix 41
AE5
C
130 134Right-handed 310
Helix 42
AE6
C
168 175Right-handed alpha
Helix 43
AE7
C
188 193Right-handed alpha
Helix 44
AE8
C
203 216Right-handed alpha
Helix 45
AE9
C
228 234Right-handed alpha
Helix 46
AF1
C
236 257Right-handed alpha
Helix 47
AF2
C
268 281Right-handed alpha
Helix 48
AF3
C
289 291Right-handed 310
Helix 49
AF4
C
292 306Right-handed alpha
Helix 50
AF5
C
314 318Right-handed 310
Helix 51
AF6
C
320 324Right-handed 310
Helix 52
AF7
D
16 21Right-handed alpha
Helix 53
AF8
D
58 67Right-handed alpha
Helix 54
AF9
D
84 86Right-handed 310
Helix 55
AG1
D
97 102Right-handed 310
Helix 56
AG2
D
113 128Right-handed alpha
Helix 57
AG3
D
130 133Right-handed 310
Helix 58
AG4
D
168 175Right-handed alpha
Helix 59
AG5
D
203 216Right-handed alpha
Helix 60
AG6
D
228 234Right-handed alpha
Helix 61
AG7
D
236 257Right-handed alpha
Helix 62
AG8
D
268 281Right-handed alpha
Helix 63
AG9
D
289 291Right-handed 310
Helix 64
AH1
D
292 306Right-handed alpha
Helix 65
AH2
D
314 318Right-handed 310
Helix 66
AH3
D
320 324Right-handed 310
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There are 9 sheets in PDB entry 9JP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
29 30parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
8 10parallel
Strand 3
A
53 57parallel
Strand 4
A
220 227anti-parallel
Strand 5
A
72 81anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
135 138parallel
Strand 3
A
105 108parallel
Strand 4
A
180 182parallel
Strand 5
A
88 91anti-parallel
Strand 6
A
197 199anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 35first strand
Strand 2
B
4 10parallel
Strand 3
B
53 57parallel
Strand 4
B
220 227anti-parallel
Strand 5
B
72 81anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
135 138parallel
Strand 3
B
105 108parallel
Strand 4
B
180 182parallel
Strand 5
B
88 91anti-parallel
Strand 6
B
197 199anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 35first strand
Strand 2
C
4 10parallel
Strand 3
C
53 57parallel
Strand 4
C
220 227anti-parallel
Strand 5
C
72 81anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 162first strand
Strand 2
C
135 138parallel
Strand 3
C
105 108parallel
Strand 4
C
180 182parallel
Strand 5
C
88 91anti-parallel
Strand 6
C
197 199anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 35first strand
Strand 2
D
4 10parallel
Strand 3
D
53 57parallel
Strand 4
D
220 227anti-parallel
Strand 5
D
72 81anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 162first strand
Strand 2
D
135 138parallel
Strand 3
D
105 108parallel
Strand 4
D
180 182parallel
Strand 5
D
88 91anti-parallel
Strand 6
D
197 199anti-parallel
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