Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JPG entry

There are 8 chains in PDB entry 9JPG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 98	ARG 472
B	MET 1	ALA 327
C	LYS 3	LYS 342
D	LYS 3	LYS 342
E	LYS 3	LYS 342
F	LYS 3	LYS 342
G	LYS 3	LYS 342
I	C 1	C 37

There are 74 helices in PDB entry 9JPG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	135	139	Right-handed 310
Helix 2	AA2	A	234	251	Right-handed alpha
Helix 3	AA3	A	251	264	Right-handed alpha
Helix 4	AA4	A	291	298	Right-handed alpha
Helix 5	AA5	A	333	349	Right-handed alpha
Helix 6	AA6	A	353	379	Right-handed alpha
Helix 7	AA7	A	385	389	Right-handed 310
Helix 8	AA8	A	395	402	Right-handed alpha
Helix 9	AA9	A	403	409	Right-handed 310
Helix 10	AB1	A	411	420	Right-handed alpha
Helix 11	AB2	A	421	440	Right-handed alpha
Helix 12	AB3	A	446	472	Right-handed alpha
Helix 13	AB4	B	34	53	Right-handed alpha
Helix 14	AB5	B	116	121	Right-handed alpha
Helix 15	AB6	B	122	136	Right-handed alpha
Helix 16	AB7	B	165	181	Right-handed alpha
Helix 17	AB8	B	189	204	Right-handed alpha
Helix 18	AB9	B	208	217	Right-handed alpha
Helix 19	AC1	B	233	238	Right-handed 310
Helix 20	AC2	B	291	295	Right-handed 310
Helix 21	AC3	B	297	301	Right-handed 310
Helix 22	AC4	B	318	324	Right-handed alpha
Helix 23	AC5	C	29	33	Right-handed 310
Helix 24	AC6	C	35	39	Right-handed 310
Helix 25	AC7	C	59	62	Right-handed 310
Helix 26	AC8	C	63	72	Right-handed alpha
Helix 27	AC9	C	111	129	Right-handed alpha
Helix 28	AD1	C	131	144	Right-handed alpha
Helix 29	AD2	C	148	152	Right-handed 310
Helix 30	AD3	C	189	204	Right-handed alpha
Helix 31	AD4	C	256	265	Right-handed alpha
Helix 32	AD5	C	297	301	Right-handed 310
Helix 33	AD6	C	303	315	Right-handed alpha
Helix 34	AD7	C	319	333	Right-handed alpha
Helix 35	AD8	D	35	39	Right-handed 310
Helix 36	AD9	D	63	73	Right-handed alpha
Helix 37	AE1	D	111	129	Right-handed alpha
Helix 38	AE2	D	131	144	Right-handed alpha
Helix 39	AE3	D	145	152	Right-handed 310
Helix 40	AE4	D	189	204	Right-handed alpha
Helix 41	AE5	D	256	265	Right-handed alpha
Helix 42	AE6	D	303	313	Right-handed alpha
Helix 43	AE7	D	319	333	Right-handed alpha
Helix 44	AE8	E	35	39	Right-handed 310
Helix 45	AE9	E	58	62	Right-handed 310
Helix 46	AF1	E	63	73	Right-handed alpha
Helix 47	AF2	E	111	129	Right-handed alpha
Helix 48	AF3	E	132	144	Right-handed alpha
Helix 49	AF4	E	145	149	Right-handed 310
Helix 50	AF5	E	189	205	Right-handed alpha
Helix 51	AF6	E	256	265	Right-handed alpha
Helix 52	AF7	E	303	314	Right-handed alpha
Helix 53	AF8	E	319	333	Right-handed alpha
Helix 54	AF9	F	29	39	Right-handed 310
Helix 55	AG1	F	58	62	Right-handed 310
Helix 56	AG2	F	63	73	Right-handed alpha
Helix 57	AG3	F	111	129	Right-handed alpha
Helix 58	AG4	F	132	145	Right-handed alpha
Helix 59	AG5	F	146	153	Right-handed 310
Helix 60	AG6	F	189	204	Right-handed alpha
Helix 61	AG7	F	256	265	Right-handed alpha
Helix 62	AG8	F	297	301	Right-handed 310
Helix 63	AG9	F	303	314	Right-handed alpha
Helix 64	AH1	F	319	333	Right-handed alpha
Helix 65	AH2	G	34	39	Right-handed 310
Helix 66	AH3	G	58	62	Right-handed 310
Helix 67	AH4	G	63	73	Right-handed alpha
Helix 68	AH5	G	111	129	Right-handed alpha
Helix 69	AH6	G	131	144	Right-handed alpha
Helix 70	AH7	G	145	152	Right-handed 310
Helix 71	AH8	G	189	204	Right-handed alpha
Helix 72	AH9	G	256	265	Right-handed alpha
Helix 73	AI1	G	303	314	Right-handed alpha
Helix 74	AI2	G	319	333	Right-handed alpha

There are 27 sheets in PDB entry 9JPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	B	278	284	parallel
Strand 3	B	252	257	anti-parallel
Strand 4	B	313	317	anti-parallel
Strand 5	B	304	308	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	B	28	30	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	16	first strand
Strand 2	B	103	114	anti-parallel
Strand 3	B	55	57	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	16	first strand
Strand 2	B	103	114	anti-parallel
Strand 3	B	62	68	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	80	81	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	188	first strand
Strand 2	B	287	290	anti-parallel
Strand 3	B	248	249	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	108	109	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	90	98	anti-parallel
Strand 3	C	211	218	anti-parallel
Strand 4	C	160	162	anti-parallel
Strand 5	C	174	176	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	90	98	anti-parallel
Strand 3	C	23	28	anti-parallel
Strand 4	C	254	255	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	76	83	anti-parallel
Strand 3	C	224	225	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	211	215	anti-parallel
Strand 4	D	159	166	anti-parallel
Strand 5	D	174	177	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	159	166	anti-parallel
Strand 3	D	211	215	anti-parallel
Strand 4	D	90	99	anti-parallel
Strand 5	D	23	28	anti-parallel
Strand 6	D	252	255	anti-parallel
Strand 7	D	248	249	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	49	first strand
Strand 2	D	77	83	anti-parallel
Strand 3	D	224	225	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	230	first strand
Strand 2	D	245	246	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	90	99	anti-parallel
Strand 3	E	211	218	anti-parallel
Strand 4	E	157	161	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	90	99	anti-parallel
Strand 3	E	23	28	anti-parallel
Strand 4	E	254	255	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	288	first strand
Strand 2	E	293	294	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	91	99	anti-parallel
Strand 3	F	210	217	anti-parallel
Strand 4	F	158	166	anti-parallel
Strand 5	F	169	170	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	F	254	255	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	51	first strand
Strand 2	F	75	79	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	229	230	first strand
Strand 2	F	245	246	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	268	first strand
Strand 2	F	280	281	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	108	109	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	20	first strand
Strand 2	G	90	99	anti-parallel
Strand 3	G	209	218	anti-parallel
Strand 4	G	157	166	anti-parallel
Strand 5	G	169	175	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	20	first strand
Strand 2	G	90	99	anti-parallel
Strand 3	G	23	28	anti-parallel
Strand 4	G	254	255	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	50	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	242	246	parallel
Strand 4	G	229	230	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	266	268	first strand
Strand 2	G	280	281	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JPG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPG