Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JPH entry

There are 9 chains in PDB entry 9JPH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 103	ASP 473
B	MET 1	ALA 327
C	LYS 3	ALA 339
D	LYS 3	GLU 340
E	MET 1	LYS 342
F	LYS 3	GLU 340
G	GLN 4	ALA 339
H	GLN 4	GLU 340
J	U 1	A 32

There are 91 helices in PDB entry 9JPH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	135	140	Right-handed 310
Helix 2	AA2	A	235	251	Right-handed alpha
Helix 3	AA3	A	251	263	Right-handed alpha
Helix 4	AA4	A	286	290	Right-handed 310
Helix 5	AA5	A	292	297	Right-handed alpha
Helix 6	AA6	A	324	329	Right-handed alpha
Helix 7	AA7	A	333	350	Right-handed alpha
Helix 8	AA8	A	354	379	Right-handed alpha
Helix 9	AA9	A	380	382	Right-handed 310
Helix 10	AB1	A	395	403	Right-handed alpha
Helix 11	AB2	A	404	409	Right-handed 310
Helix 12	AB3	A	410	420	Right-handed alpha
Helix 13	AB4	A	421	439	Right-handed alpha
Helix 14	AB5	A	446	473	Right-handed alpha
Helix 15	AB6	B	33	53	Right-handed alpha
Helix 16	AB7	B	116	121	Right-handed alpha
Helix 17	AB8	B	122	136	Right-handed alpha
Helix 18	AB9	B	165	180	Right-handed alpha
Helix 19	AC1	B	189	201	Right-handed alpha
Helix 20	AC2	B	208	217	Right-handed alpha
Helix 21	AC3	B	227	233	Right-handed 310
Helix 22	AC4	B	297	302	Right-handed 310
Helix 23	AC5	C	30	39	Right-handed 310
Helix 24	AC6	C	59	62	Right-handed 310
Helix 25	AC7	C	63	73	Right-handed alpha
Helix 26	AC8	C	111	129	Right-handed alpha
Helix 27	AC9	C	131	144	Right-handed alpha
Helix 28	AD1	C	148	153	Right-handed 310
Helix 29	AD2	C	177	182	Right-handed alpha
Helix 30	AD3	C	189	204	Right-handed alpha
Helix 31	AD4	C	256	265	Right-handed alpha
Helix 32	AD5	C	303	314	Right-handed alpha
Helix 33	AD6	C	319	333	Right-handed alpha
Helix 34	AD7	D	29	39	Right-handed 310
Helix 35	AD8	D	58	62	Right-handed 310
Helix 36	AD9	D	63	73	Right-handed alpha
Helix 37	AE1	D	111	130	Right-handed alpha
Helix 38	AE2	D	131	144	Right-handed alpha
Helix 39	AE3	D	145	152	Right-handed 310
Helix 40	AE4	D	178	182	Right-handed alpha
Helix 41	AE5	D	189	205	Right-handed alpha
Helix 42	AE6	D	256	265	Right-handed alpha
Helix 43	AE7	D	303	313	Right-handed alpha
Helix 44	AE8	D	319	332	Right-handed alpha
Helix 45	AE9	E	29	39	Right-handed 310
Helix 46	AF1	E	58	62	Right-handed 310
Helix 47	AF2	E	63	73	Right-handed alpha
Helix 48	AF3	E	111	129	Right-handed alpha
Helix 49	AF4	E	131	144	Right-handed alpha
Helix 50	AF5	E	145	152	Right-handed 310
Helix 51	AF6	E	178	182	Right-handed alpha
Helix 52	AF7	E	189	204	Right-handed alpha
Helix 53	AF8	E	256	265	Right-handed alpha
Helix 54	AF9	E	303	314	Right-handed alpha
Helix 55	AG1	E	319	333	Right-handed alpha
Helix 56	AG2	F	29	33	Right-handed 310
Helix 57	AG3	F	35	39	Right-handed 310
Helix 58	AG4	F	63	73	Right-handed alpha
Helix 59	AG5	F	112	129	Right-handed alpha
Helix 60	AG6	F	131	144	Right-handed alpha
Helix 61	AG7	F	145	147	Right-handed 310
Helix 62	AG8	F	148	153	Right-handed alpha
Helix 63	AG9	F	178	182	Right-handed alpha
Helix 64	AH1	F	189	204	Right-handed alpha
Helix 65	AH2	F	256	265	Right-handed alpha
Helix 66	AH3	F	297	301	Right-handed 310
Helix 67	AH4	F	303	314	Right-handed alpha
Helix 68	AH5	F	319	333	Right-handed alpha
Helix 69	AH6	G	29	39	Right-handed 310
Helix 70	AH7	G	59	62	Right-handed 310
Helix 71	AH8	G	63	73	Right-handed alpha
Helix 72	AH9	G	111	130	Right-handed alpha
Helix 73	AI1	G	131	144	Right-handed alpha
Helix 74	AI2	G	145	153	Right-handed 310
Helix 75	AI3	G	177	182	Right-handed alpha
Helix 76	AI4	G	189	205	Right-handed alpha
Helix 77	AI5	G	256	265	Right-handed alpha
Helix 78	AI6	G	297	301	Right-handed 310
Helix 79	AI7	G	303	313	Right-handed alpha
Helix 80	AI8	G	319	333	Right-handed alpha
Helix 81	AI9	H	29	33	Right-handed 310
Helix 82	AJ1	H	59	62	Right-handed 310
Helix 83	AJ2	H	63	73	Right-handed alpha
Helix 84	AJ3	H	111	129	Right-handed alpha
Helix 85	AJ4	H	131	144	Right-handed alpha
Helix 86	AJ5	H	145	152	Right-handed 310
Helix 87	AJ6	H	177	182	Right-handed alpha
Helix 88	AJ7	H	189	205	Right-handed alpha
Helix 89	AJ8	H	256	265	Right-handed alpha
Helix 90	AJ9	H	303	313	Right-handed alpha
Helix 91	AK1	H	319	333	Right-handed alpha

There are 47 sheets in PDB entry 9JPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	146	147	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	233	234	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	226	229	anti-parallel
Strand 3	B	277	278	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	B	219	222	anti-parallel
Strand 3	B	240	241	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	281	first strand
Strand 2	A	300	306	anti-parallel
Strand 3	B	28	30	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	102	114	anti-parallel
Strand 3	B	8	21	anti-parallel
Strand 4	B	158	161	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	145	first strand
Strand 2	B	8	21	anti-parallel
Strand 3	B	102	114	anti-parallel
Strand 4	B	55	63	anti-parallel
Strand 5	B	184	188	anti-parallel
Strand 6	B	280	290	anti-parallel
Strand 7	B	248	257	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	80	81	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	308	first strand
Strand 2	B	313	317	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	C	12	14	anti-parallel
Strand 3	C	334	335	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	90	99	anti-parallel
Strand 3	C	209	217	anti-parallel
Strand 4	C	158	166	anti-parallel
Strand 5	C	169	176	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	90	99	anti-parallel
Strand 3	C	23	28	anti-parallel
Strand 4	C	254	255	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	50	first strand
Strand 2	C	76	83	anti-parallel
Strand 3	C	224	225	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	268	first strand
Strand 2	C	280	281	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	293	294	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	109	first strand
Strand 2	D	12	14	anti-parallel
Strand 3	D	334	335	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	209	218	anti-parallel
Strand 4	D	158	166	anti-parallel
Strand 5	D	169	177	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	23	28	anti-parallel
Strand 4	D	254	255	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	76	83	anti-parallel
Strand 3	D	224	225	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	76	83	anti-parallel
Strand 3	D	242	244	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	288	first strand
Strand 2	D	293	294	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	109	first strand
Strand 2	E	12	14	anti-parallel
Strand 3	E	334	335	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	90	99	anti-parallel
Strand 3	E	209	218	anti-parallel
Strand 4	E	157	166	anti-parallel
Strand 5	E	176	177	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	173	first strand
Strand 2	E	157	166	anti-parallel
Strand 3	E	209	218	anti-parallel
Strand 4	E	90	99	anti-parallel
Strand 5	E	23	28	anti-parallel
Strand 6	E	252	255	anti-parallel
Strand 7	E	248	249	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	51	first strand
Strand 2	E	75	83	anti-parallel
Strand 3	E	224	225	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	51	first strand
Strand 2	E	75	83	anti-parallel
Strand 3	E	242	246	parallel
Strand 4	E	229	230	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	288	first strand
Strand 2	E	293	294	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	108	109	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	90	99	anti-parallel
Strand 3	F	24	28	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	90	99	anti-parallel
Strand 3	F	209	218	anti-parallel
Strand 4	F	158	166	anti-parallel
Strand 5	F	169	177	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	50	first strand
Strand 2	F	76	83	anti-parallel
Strand 3	F	224	225	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	249	first strand
Strand 2	F	252	253	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	268	first strand
Strand 2	F	280	281	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	108	109	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	20	first strand
Strand 2	G	90	99	anti-parallel
Strand 3	G	210	218	anti-parallel
Strand 4	G	160	166	anti-parallel
Strand 5	G	169	175	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	20	first strand
Strand 2	G	90	99	anti-parallel
Strand 3	G	23	28	anti-parallel
Strand 4	G	252	255	anti-parallel
Strand 5	G	248	249	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	50	first strand
Strand 2	G	76	83	anti-parallel
Strand 3	G	224	225	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	50	first strand
Strand 2	G	76	83	anti-parallel
Strand 3	G	242	244	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	266	268	first strand
Strand 2	G	280	281	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	287	288	first strand
Strand 2	G	293	294	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	109	first strand
Strand 2	H	12	14	anti-parallel
Strand 3	H	334	335	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	94	99	anti-parallel
Strand 3	H	209	214	anti-parallel
Strand 4	H	162	166	anti-parallel
Strand 5	H	169	173	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	254	255	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	28	first strand
Strand 2	H	90	91	anti-parallel
Strand 3	H	217	218	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	51	first strand
Strand 2	H	75	81	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	268	first strand
Strand 2	H	280	281	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	287	288	first strand
Strand 2	H	293	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JPH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPH