Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JPJ entry

There are 12 chains in PDB entry 9JPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	A 1	G 27
H	C 1	T 27
C	MET 1	ARG 226
D	MET 1	ASP 228
A	A 1	G 27
B	C 1	T 27
E	MET 1	ARG 224
F	LYS 4	LEU 227
I	MET 1	ARG 226
J	MET 1	ASP 228
K	MET 1	SER 231
L	LYS 4	ASP 228

There are 82 helices in PDB entry 9JPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	7	22	Right-handed alpha
Helix 2	AA2	C	33	42	Right-handed alpha
Helix 3	AA3	C	44	59	Right-handed alpha
Helix 4	AA4	C	88	94	Right-handed alpha
Helix 5	AA5	C	95	110	Right-handed alpha
Helix 6	AA6	C	115	132	Right-handed alpha
Helix 7	AA7	C	139	153	Right-handed alpha
Helix 8	AA8	C	156	174	Right-handed alpha
Helix 9	AA9	C	188	203	Right-handed alpha
Helix 10	AB1	C	206	226	Right-handed alpha
Helix 11	AB2	D	7	23	Right-handed alpha
Helix 12	AB3	D	33	42	Right-handed alpha
Helix 13	AB4	D	44	58	Right-handed alpha
Helix 14	AB5	D	89	97	Right-handed alpha
Helix 15	AB6	D	98	114	Right-handed alpha
Helix 16	AB7	D	115	130	Right-handed alpha
Helix 17	AB8	D	138	154	Right-handed alpha
Helix 18	AB9	D	156	167	Right-handed alpha
Helix 19	AC1	D	188	204	Right-handed alpha
Helix 20	AC2	D	206	226	Right-handed alpha
Helix 21	AC3	E	7	22	Right-handed alpha
Helix 22	AC4	E	33	41	Right-handed alpha
Helix 23	AC5	E	44	58	Right-handed alpha
Helix 24	AC6	E	88	110	Right-handed alpha
Helix 25	AC7	E	115	132	Right-handed alpha
Helix 26	AC8	E	133	135	Right-handed 310
Helix 27	AC9	E	139	153	Right-handed alpha
Helix 28	AD1	E	156	174	Right-handed alpha
Helix 29	AD2	E	188	205	Right-handed alpha
Helix 30	AD3	E	206	222	Right-handed alpha
Helix 31	AD4	F	9	23	Right-handed alpha
Helix 32	AD5	F	33	42	Right-handed alpha
Helix 33	AD6	F	44	59	Right-handed alpha
Helix 34	AD7	F	92	113	Right-handed alpha
Helix 35	AD8	F	115	131	Right-handed alpha
Helix 36	AD9	F	138	154	Right-handed alpha
Helix 37	AE1	F	158	171	Right-handed alpha
Helix 38	AE2	F	188	197	Right-handed alpha
Helix 39	AE3	F	198	203	Right-handed alpha
Helix 40	AE4	F	206	227	Right-handed alpha
Helix 41	AE5	I	7	22	Right-handed alpha
Helix 42	AE6	I	33	42	Right-handed alpha
Helix 43	AE7	I	44	59	Right-handed alpha
Helix 44	AE8	I	88	112	Right-handed alpha
Helix 45	AE9	I	115	132	Right-handed alpha
Helix 46	AF1	I	133	135	Right-handed 310
Helix 47	AF2	I	137	141	Right-handed 310
Helix 48	AF3	I	142	154	Right-handed alpha
Helix 49	AF4	I	156	171	Right-handed alpha
Helix 50	AF5	I	189	197	Right-handed alpha
Helix 51	AF6	I	198	203	Right-handed alpha
Helix 52	AF7	I	206	226	Right-handed alpha
Helix 53	AF8	J	7	23	Right-handed alpha
Helix 54	AF9	J	34	42	Right-handed alpha
Helix 55	AG1	J	44	58	Right-handed alpha
Helix 56	AG2	J	92	111	Right-handed alpha
Helix 57	AG3	J	115	131	Right-handed alpha
Helix 58	AG4	J	139	153	Right-handed alpha
Helix 59	AG5	J	156	168	Right-handed alpha
Helix 60	AG6	J	189	203	Right-handed alpha
Helix 61	AG7	J	206	227	Right-handed alpha
Helix 62	AG8	K	7	22	Right-handed alpha
Helix 63	AG9	K	33	42	Right-handed alpha
Helix 64	AH1	K	44	58	Right-handed alpha
Helix 65	AH2	K	88	93	Right-handed alpha
Helix 66	AH3	K	95	113	Right-handed alpha
Helix 67	AH4	K	115	131	Right-handed alpha
Helix 68	AH5	K	139	153	Right-handed alpha
Helix 69	AH6	K	156	174	Right-handed alpha
Helix 70	AH7	K	188	204	Right-handed alpha
Helix 71	AH8	K	206	222	Right-handed alpha
Helix 72	AH9	L	9	22	Right-handed alpha
Helix 73	AI1	L	35	42	Right-handed alpha
Helix 74	AI2	L	44	58	Right-handed alpha
Helix 75	AI3	L	90	112	Right-handed alpha
Helix 76	AI4	L	117	131	Right-handed alpha
Helix 77	AI5	L	139	154	Right-handed alpha
Helix 78	AI6	L	156	165	Right-handed alpha
Helix 79	AI7	L	166	169	Right-handed 310
Helix 80	AI8	L	188	205	Right-handed alpha
Helix 81	AI9	L	206	224	Right-handed alpha
Helix 82	AJ1	L	226	228	Right-handed 310

There are 8 sheets in PDB entry 9JPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	70	71	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	64	first strand
Strand 2	D	68	71	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	64	first strand
Strand 2	E	68	71	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	68	71	anti-parallel
Strand 3	F	61	64	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	31	first strand
Strand 2	I	69	71	anti-parallel
Strand 3	I	61	63	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	61	64	first strand
Strand 2	J	68	71	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	64	first strand
Strand 2	K	68	71	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	68	71	anti-parallel
Strand 3	L	61	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPJ