Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JPU entry

There are 9 chains in PDB entry 9JPU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 461	ALA 1008
B	MET 1	CYS 350
C	GLY 461	ASN 1007
D	MET 1	SER 351
F	G 16	G 30
G	T 28	G 41
L	C 17	C 31
M	C 17	A 30
E	GLU 410	GLN 483

There are 56 helices in PDB entry 9JPU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	463	474	Right-handed alpha
Helix 2	AA2	A	477	493	Right-handed alpha
Helix 3	AA3	A	499	507	Right-handed alpha
Helix 4	AA4	A	558	581	Right-handed alpha
Helix 5	AA5	A	664	682	Right-handed alpha
Helix 6	AA6	A	708	716	Right-handed alpha
Helix 7	AA7	A	733	741	Right-handed alpha
Helix 8	AA8	A	749	763	Right-handed alpha
Helix 9	AA9	A	768	776	Right-handed alpha
Helix 10	AB1	A	792	812	Right-handed alpha
Helix 11	AB2	A	824	841	Right-handed alpha
Helix 12	AB3	A	850	858	Right-handed alpha
Helix 13	AB4	A	859	867	Right-handed alpha
Helix 14	AB5	A	868	870	Right-handed 310
Helix 15	AB6	A	872	890	Right-handed alpha
Helix 16	AB7	A	891	893	Right-handed 310
Helix 17	AB8	A	897	902	Right-handed alpha
Helix 18	AB9	A	902	908	Right-handed alpha
Helix 19	AC1	A	909	923	Right-handed alpha
Helix 20	AC2	A	933	942	Right-handed alpha
Helix 21	AC3	A	943	951	Right-handed alpha
Helix 22	AC4	A	958	975	Right-handed alpha
Helix 23	AC5	A	982	995	Right-handed alpha
Helix 24	AC6	A	996	1004	Right-handed alpha
Helix 25	AC7	B	11	15	Right-handed 310
Helix 26	AC8	B	168	172	Right-handed 310
Helix 27	AC9	B	308	313	Right-handed alpha
Helix 28	AD1	C	463	474	Right-handed alpha
Helix 29	AD2	C	477	493	Right-handed alpha
Helix 30	AD3	C	499	507	Right-handed alpha
Helix 31	AD4	C	508	510	Right-handed 310
Helix 32	AD5	C	558	569	Right-handed alpha
Helix 33	AD6	C	570	581	Right-handed alpha
Helix 34	AD7	C	664	684	Right-handed alpha
Helix 35	AD8	C	708	716	Right-handed alpha
Helix 36	AD9	C	733	741	Right-handed alpha
Helix 37	AE1	C	749	763	Right-handed alpha
Helix 38	AE2	C	768	777	Right-handed alpha
Helix 39	AE3	C	792	813	Right-handed alpha
Helix 40	AE4	C	822	842	Right-handed alpha
Helix 41	AE5	C	850	858	Right-handed alpha
Helix 42	AE6	C	859	868	Right-handed alpha
Helix 43	AE7	C	872	895	Right-handed alpha
Helix 44	AE8	C	897	902	Right-handed alpha
Helix 45	AE9	C	902	908	Right-handed alpha
Helix 46	AF1	C	909	923	Right-handed alpha
Helix 47	AF2	C	933	942	Right-handed alpha
Helix 48	AF3	C	942	950	Right-handed alpha
Helix 49	AF4	C	958	975	Right-handed alpha
Helix 50	AF5	C	982	995	Right-handed alpha
Helix 51	AF6	C	996	1004	Right-handed alpha
Helix 52	AF7	D	11	15	Right-handed 310
Helix 53	AF8	D	168	172	Right-handed 310
Helix 54	AF9	D	308	313	Right-handed alpha
Helix 55	AG1	E	457	460	Right-handed 310
Helix 56	AG2	E	462	470	Right-handed alpha

There are 21 sheets in PDB entry 9JPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	520	first strand
Strand 2	A	686	690	anti-parallel
Strand 3	A	695	698	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	554	556	anti-parallel
Strand 3	A	653	658	anti-parallel
Strand 4	A	620	632	anti-parallel
Strand 5	A	637	642	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	554	556	anti-parallel
Strand 3	A	653	658	anti-parallel
Strand 4	A	620	632	anti-parallel
Strand 5	A	591	601	anti-parallel
Strand 6	A	700	704	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	346	349	anti-parallel
Strand 3	B	326	330	anti-parallel
Strand 4	B	318	321	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	54	59	parallel
Strand 3	B	45	51	anti-parallel
Strand 4	B	27	31	anti-parallel
Strand 5	B	20	24	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	119	127	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	195	parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	150	155	anti-parallel
Strand 5	B	142	147	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	252	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	288	292	anti-parallel
Strand 4	B	297	301	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	704	anti-parallel
Strand 4	C	590	601	parallel
Strand 5	C	620	633	anti-parallel
Strand 6	C	653	658	anti-parallel
Strand 7	C	554	556	anti-parallel
Strand 8	C	535	536	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	704	anti-parallel
Strand 4	C	590	601	parallel
Strand 5	C	620	633	anti-parallel
Strand 6	C	636	642	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	344	349	anti-parallel
Strand 3	D	326	331	anti-parallel
Strand 4	D	318	321	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	27	31	anti-parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	54	59	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	119	127	parallel
Strand 3	D	107	116	anti-parallel
Strand 4	D	90	94	anti-parallel
Strand 5	D	76	80	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	195	parallel
Strand 3	D	182	186	anti-parallel
Strand 4	D	150	155	anti-parallel
Strand 5	D	142	147	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	246	252	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	270	274	anti-parallel
Strand 3	D	288	291	anti-parallel
Strand 4	D	298	301	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	279	first strand
Strand 2	D	282	283	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	443	446	first strand
Strand 2	E	452	455	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JPU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPU