Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JPV entry

There are 4 chains in PDB entry 9JPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 5	LYS 220
B	ASP 1	CYS 218
C	GLN 5	SER 221
D	ASP 1	CYS 218

There are 19 helices in PDB entry 9JPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	55	Right-handed 310
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	133	135	Right-handed 310
Helix 4	AA4	A	162	164	Right-handed 310
Helix 5	AA5	A	193	195	Right-handed 310
Helix 6	AA6	A	207	209	Right-handed 310
Helix 7	AA7	B	83	87	Right-handed 310
Helix 8	AA8	B	125	131	Right-handed alpha
Helix 9	AA9	B	187	193	Right-handed alpha
Helix 10	AB1	C	61	64	Right-handed 310
Helix 11	AB2	C	73	75	Right-handed 310
Helix 12	AB3	C	86	90	Right-handed 310
Helix 13	AB4	C	133	135	Right-handed 310
Helix 14	AB5	C	162	164	Right-handed 310
Helix 15	AB6	C	193	198	Right-handed alpha
Helix 16	AB7	C	207	209	Right-handed 310
Helix 17	AB8	D	83	87	Right-handed 310
Helix 18	AB9	D	125	131	Right-handed alpha
Helix 19	AC1	D	187	193	Right-handed alpha

There are 23 sheets in PDB entry 9JPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	113	116	parallel
Strand 3	A	91	101	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	113	116	parallel
Strand 3	A	91	101	anti-parallel
Strand 4	A	104	108	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand
Strand 2	A	77	82	anti-parallel
Strand 3	A	67	72	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	169	171	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	175	176	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	211	216	anti-parallel
Strand 4	C	211	217	anti-parallel
Strand 5	C	200	206	anti-parallel
Strand 6	C	157	160	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	66	71	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	106	110	parallel
Strand 3	B	88	94	anti-parallel
Strand 4	B	37	42	anti-parallel
Strand 5	B	49	53	anti-parallel
Strand 6	B	57	58	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	106	110	parallel
Strand 3	B	88	94	anti-parallel
Strand 4	B	101	102	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	34	35	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	177	186	anti-parallel
Strand 4	B	163	167	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	149	154	anti-parallel
Strand 3	B	195	201	anti-parallel
Strand 4	B	209	214	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	91	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	91	99	anti-parallel
Strand 4	C	106	108	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	67	72	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	169	171	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	175	176	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	66	71	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	106	110	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	37	42	anti-parallel
Strand 5	D	49	53	anti-parallel
Strand 6	D	57	58	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	106	110	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	101	102	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	34	35	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	133	143	anti-parallel
Strand 3	D	177	186	anti-parallel
Strand 4	D	163	167	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	195	201	anti-parallel
Strand 3	D	209	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JPV