Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JQ5 entry

There are 4 chains in PDB entry 9JQ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	ASP 392
B	VAL 6	ASP 392
C	VAL 6	ASP 392
D	VAL 6	ASP 392

There are 72 helices in PDB entry 9JQ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	12	Right-handed 310
Helix 2	AA2	A	14	32	Right-handed alpha
Helix 3	AA3	A	35	43	Right-handed alpha
Helix 4	AA4	A	47	59	Right-handed alpha
Helix 5	AA5	A	66	70	Right-handed 310
Helix 6	AA6	A	75	90	Right-handed alpha
Helix 7	AA7	A	90	112	Right-handed alpha
Helix 8	AA8	A	113	126	Right-handed alpha
Helix 9	AA9	A	143	147	Right-handed 310
Helix 10	AB1	A	188	191	Right-handed 310
Helix 11	AB2	A	242	258	Right-handed alpha
Helix 12	AB3	A	259	278	Right-handed alpha
Helix 13	AB4	A	290	321	Right-handed alpha
Helix 14	AB5	A	324	350	Right-handed alpha
Helix 15	AB6	A	351	356	Right-handed 310
Helix 16	AB7	A	360	369	Right-handed alpha
Helix 17	AB8	A	369	374	Right-handed alpha
Helix 18	AB9	A	377	391	Right-handed alpha
Helix 19	AC1	B	8	12	Right-handed 310
Helix 20	AC2	B	17	31	Right-handed alpha
Helix 21	AC3	B	32	34	Right-handed 310
Helix 22	AC4	B	35	43	Right-handed alpha
Helix 23	AC5	B	47	58	Right-handed alpha
Helix 24	AC6	B	75	90	Right-handed alpha
Helix 25	AC7	B	90	102	Right-handed alpha
Helix 26	AC8	B	104	112	Right-handed alpha
Helix 27	AC9	B	113	126	Right-handed alpha
Helix 28	AD1	B	143	147	Right-handed 310
Helix 29	AD2	B	189	191	Right-handed 310
Helix 30	AD3	B	243	258	Right-handed alpha
Helix 31	AD4	B	259	280	Right-handed alpha
Helix 32	AD5	B	290	320	Right-handed alpha
Helix 33	AD6	B	324	351	Right-handed alpha
Helix 34	AD7	B	352	356	Right-handed 310
Helix 35	AD8	B	360	369	Right-handed alpha
Helix 36	AD9	B	370	373	Right-handed 310
Helix 37	AE1	B	377	391	Right-handed alpha
Helix 38	AE2	C	8	12	Right-handed 310
Helix 39	AE3	C	14	32	Right-handed alpha
Helix 40	AE4	C	35	43	Right-handed alpha
Helix 41	AE5	C	47	59	Right-handed alpha
Helix 42	AE6	C	66	70	Right-handed 310
Helix 43	AE7	C	75	90	Right-handed alpha
Helix 44	AE8	C	90	102	Right-handed alpha
Helix 45	AE9	C	104	112	Right-handed alpha
Helix 46	AF1	C	113	126	Right-handed alpha
Helix 47	AF2	C	143	147	Right-handed 310
Helix 48	AF3	C	243	258	Right-handed alpha
Helix 49	AF4	C	259	277	Right-handed alpha
Helix 50	AF5	C	290	319	Right-handed alpha
Helix 51	AF6	C	324	351	Right-handed alpha
Helix 52	AF7	C	360	369	Right-handed alpha
Helix 53	AF8	C	370	373	Right-handed 310
Helix 54	AF9	C	377	388	Right-handed alpha
Helix 55	AG1	D	8	12	Right-handed 310
Helix 56	AG2	D	14	29	Right-handed alpha
Helix 57	AG3	D	32	34	Right-handed 310
Helix 58	AG4	D	35	43	Right-handed alpha
Helix 59	AG5	D	47	59	Right-handed alpha
Helix 60	AG6	D	75	86	Right-handed alpha
Helix 61	AG7	D	93	102	Right-handed alpha
Helix 62	AG8	D	104	111	Right-handed alpha
Helix 63	AG9	D	120	125	Right-handed alpha
Helix 64	AH1	D	143	147	Right-handed 310
Helix 65	AH2	D	188	191	Right-handed 310
Helix 66	AH3	D	242	258	Right-handed alpha
Helix 67	AH4	D	259	278	Right-handed alpha
Helix 68	AH5	D	290	319	Right-handed alpha
Helix 69	AH6	D	324	351	Right-handed alpha
Helix 70	AH7	D	360	369	Right-handed alpha
Helix 71	AH8	D	369	374	Right-handed alpha
Helix 72	AH9	D	377	392	Right-handed alpha

There are 14 sheets in PDB entry 9JQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	134	first strand
Strand 2	A	175	181	parallel
Strand 3	A	193	199	anti-parallel
Strand 4	A	236	237	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	157	168	anti-parallel
Strand 3	A	221	232	anti-parallel
Strand 4	A	205	207	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	285	286	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	134	first strand
Strand 2	B	175	181	parallel
Strand 3	B	193	199	anti-parallel
Strand 4	B	236	237	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	229	232	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	221	226	anti-parallel
Strand 3	B	205	207	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	285	286	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	C	175	181	parallel
Strand 3	C	193	199	anti-parallel
Strand 4	C	236	237	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	154	first strand
Strand 2	C	157	168	anti-parallel
Strand 3	C	221	232	anti-parallel
Strand 4	C	205	207	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	285	286	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	134	first strand
Strand 2	D	175	181	parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	236	237	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	157	168	anti-parallel
Strand 3	D	221	226	anti-parallel
Strand 4	D	205	207	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	157	168	anti-parallel
Strand 3	D	231	232	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	285	286	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JQ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQ5