Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JQ6 entry

There are 6 chains in PDB entry 9JQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLN 1SER 215
F
 GLN 1SER 215
H
 GLU 1ARG 221
I
 ASP 1ASN 216
J
 GLU 1ARG 221
K
 ASP 1ASN 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9JQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
56 60Right-handed 310
Helix 2
AA2
E
74 78Right-handed 310
Helix 3
AA3
E
88 92Right-handed 310
Helix 4
AA4
E
209 213Right-handed 310
Helix 5
AA5
F
88 92Right-handed 310
Helix 6
AA6
F
209 213Right-handed 310
Helix 7
AA7
H
28 32Right-handed 310
Helix 8
AA8
H
62 66Right-handed 310
Helix 9
AA9
H
194 199Right-handed alpha
Helix 10
AB1
I
83 87Right-handed 310
Helix 11
AB2
I
125 131Right-handed alpha
Helix 12
AB3
I
187 193Right-handed alpha
Helix 13
AB4
J
28 32Right-handed 310
Helix 14
AB5
J
62 65Right-handed 310
Helix 15
AB6
J
135 139Right-handed 310
Helix 16
AB7
J
164 166Right-handed 310
Helix 17
AB8
K
83 87Right-handed 310
Helix 18
AB9
K
125 132Right-handed alpha
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There are 34 sheets in PDB entry 9JQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 5first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
80 84anti-parallel
Strand 4
E
68 71anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
105 115parallel
Strand 3
E
93 100anti-parallel
Strand 4
E
35 38anti-parallel
Strand 5
E
48 51anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 128first strand
Strand 2
E
133 142anti-parallel
Strand 3
E
173 181anti-parallel
Strand 4
E
162 163anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 128first strand
Strand 2
E
133 142anti-parallel
Strand 3
E
173 181anti-parallel
Strand 4
E
166 167anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
157 158first strand
Strand 2
E
147 151anti-parallel
Strand 3
E
188 195anti-parallel
Strand 4
E
200 207anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 5first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
80 84anti-parallel
Strand 4
F
68 71anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 14first strand
Strand 2
F
104 115parallel
Strand 3
F
93 101anti-parallel
Strand 4
F
35 37anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
122 129first strand
Strand 2
F
132 142anti-parallel
Strand 3
F
173 181anti-parallel
Strand 4
F
162 163anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
122 129first strand
Strand 2
F
132 142anti-parallel
Strand 3
F
173 181anti-parallel
Strand 4
F
166 167anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
147 150first strand
Strand 2
F
188 195anti-parallel
Strand 3
F
200 202anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
147 150first strand
Strand 2
F
188 195anti-parallel
Strand 3
F
205 207anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
115 119parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
115 119parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
107 111anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
128 131first strand
Strand 2
H
148 151anti-parallel
Strand 3
H
183 187anti-parallel
Strand 4
H
173 178anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
143 145first strand
Strand 2
H
190 192anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
159 162first strand
Strand 2
H
202 206anti-parallel
Strand 3
H
214 217anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
5 7first strand
Strand 2
I
19 24anti-parallel
Strand 3
I
76 79anti-parallel
Strand 4
I
66 67anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 14first strand
Strand 2
I
106 111parallel
Strand 3
I
89 94anti-parallel
Strand 4
I
37 42anti-parallel
Strand 5
I
49 52anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
118 122first strand
Strand 2
I
137 143anti-parallel
Strand 3
I
177 183anti-parallel
Strand 4
I
163 167anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
133 134first strand
Strand 2
I
185 186anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
148 153first strand
Strand 2
I
196 202anti-parallel
Strand 3
I
205 213anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 7first strand
Strand 2
J
17 25anti-parallel
Strand 3
J
78 84anti-parallel
Strand 4
J
68 73anti-parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 12first strand
Strand 2
J
115 119parallel
Strand 3
J
92 100anti-parallel
Strand 4
J
33 39anti-parallel
Strand 5
J
45 51anti-parallel
Strand 6
J
58 60anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 12first strand
Strand 2
J
115 119parallel
Strand 3
J
92 100anti-parallel
Strand 4
J
107 111anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
129 130first strand
Strand 2
J
149 151anti-parallel
Strand 3
J
182 192anti-parallel
Strand 4
J
143 146anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
129 130first strand
Strand 2
J
149 151anti-parallel
Strand 3
J
182 192anti-parallel
Strand 4
J
171 179anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
159 162first strand
Strand 2
J
201 207anti-parallel
Strand 3
J
212 214anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
159 162first strand
Strand 2
J
201 207anti-parallel
Strand 3
J
217 218anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
4 7first strand
Strand 2
K
19 25anti-parallel
Strand 3
K
74 79anti-parallel
Strand 4
K
66 71anti-parallel
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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 14first strand
Strand 2
K
106 111parallel
Strand 3
K
89 91anti-parallel
Strand 4
K
39 42anti-parallel
Strand 5
K
49 52anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
30 31first strand
Strand 2
K
34 35anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
118 122first strand
Strand 2
K
137 143anti-parallel
Strand 3
K
177 182anti-parallel
Strand 4
K
166 167anti-parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
151 153first strand
Strand 2
K
196 200anti-parallel
Strand 3
K
209 213anti-parallel
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