Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JQ8 entry

There are 2 chains in PDB entry 9JQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	LYS 113
B	SER 2	LYS 113

There are 10 helices in PDB entry 9JQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	18	Right-handed alpha
Helix 2	AA2	A	43	56	Right-handed alpha
Helix 3	AA3	A	59	63	Right-handed 310
Helix 4	AA4	A	95	99	Right-handed 310
Helix 5	AA5	A	100	112	Right-handed alpha
Helix 6	AA6	B	3	18	Right-handed alpha
Helix 7	AA7	B	43	56	Right-handed alpha
Helix 8	AA8	B	59	63	Right-handed 310
Helix 9	AA9	B	96	99	Right-handed 310
Helix 10	AB1	B	100	113	Right-handed alpha

There is 1 sheet (AA1) in PDB entry 9JQ8.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	38	first strand
Strand 2	A	21	28	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	77	83	anti-parallel
Strand 5	A	67	74	anti-parallel
Strand 6	B	67	74	anti-parallel
Strand 7	B	77	83	anti-parallel
Strand 8	B	87	93	anti-parallel
Strand 9	B	21	28	anti-parallel
Strand 10	B	33	38	anti-parallel

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQ8