Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JQA entry

There are 3 chains in PDB entry 9JQA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 542
B
 ASN 47PHE 183
C
 PRO 177GLN 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9JQA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
55 61Right-handed alpha
Helix 4
AA4
A
92 97Right-handed 310
Helix 5
AA5
A
105 110Right-handed 310
Helix 6
AA6
A
124 130Right-handed alpha
Helix 7
AA7
A
138 154Right-handed alpha
Helix 8
AA8
A
181 193Right-handed alpha
Helix 9
AA9
A
234 244Right-handed alpha
Helix 10
AB1
A
289 301Right-handed alpha
Helix 11
AB2
A
355 360Right-handed 310
Helix 12
AB3
A
373 384Right-handed alpha
Helix 13
AB4
A
387 401Right-handed alpha
Helix 14
AB5
A
440 462Right-handed alpha
Helix 15
AB6
A
510 514Right-handed 310
Helix 16
AB7
A
522 542Right-handed alpha
Helix 17
AB8
B
48 63Right-handed alpha
Helix 18
AB9
B
68 83Right-handed alpha
Helix 19
AC1
B
85 101Right-handed alpha
Helix 20
AC2
B
104 112Right-handed alpha
Helix 21
AC3
B
117 131Right-handed alpha
Helix 22
AC4
B
147 151Right-handed 310
Helix 23
AC5
B
168 172Right-handed 310
Helix 24
AC6
C
185 197Right-handed alpha
Helix 25
AC7
C
201 206Right-handed alpha
Helix 26
AC8
C
245 256Right-handed alpha
Helix 27
AC9
C
265 274Right-handed alpha
Helix 28
AD1
C
275 278Right-handed 310
Helix 29
AD2
C
279 291Right-handed alpha
Helix 30
AD3
C
317 324Right-handed 310
Helix 31
AD4
C
328 332Right-handed 310
Helix 32
AD5
C
334 344Right-handed alpha
Helix 33
AD6
C
365 370Right-handed alpha
Helix 34
AD7
C
373 383Right-handed alpha
Helix 35
AD8
C
408 424Right-handed alpha
Helix 36
AD9
C
431 440Right-handed alpha
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There are 7 sheets in PDB entry 9JQA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
33 36parallel
Strand 3
A
8 13parallel
Strand 4
A
277 287parallel
Strand 5
A
265 271anti-parallel
Strand 6
A
253 259anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
33 36parallel
Strand 3
A
8 13parallel
Strand 4
A
277 287parallel
Strand 5
A
506 508parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
432 437parallel
Strand 3
A
418 426anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
175 176parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
347 349anti-parallel
Strand 3
A
364 369anti-parallel
Strand 4
A
402 409anti-parallel
Strand 5
A
326 332anti-parallel
Strand 6
A
465 469anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 225first strand
Strand 2
C
228 230anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
384 388first strand
Strand 2
C
391 395anti-parallel
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