Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JQF entry

There are 2 chains in PDB entry 9JQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ASN 34
A
 ALA 36TYR 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9JQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 28Right-handed 310
Helix 2
AA2
A
32 39Right-handed alpha
Helix 3
AA3
A
39 45Right-handed alpha
Helix 4
AA4
A
61 74Right-handed alpha
Helix 5
AA5
A
86 92Right-handed alpha
Helix 6
AA6
A
97 103Right-handed alpha
Helix 7
AA7
A
115 123Right-handed alpha
Helix 8
AA8
A
132 136Right-handed 310
Helix 9
AA9
A
137 139Right-handed 310
Helix 10
AB1
A
140 159Right-handed alpha
Helix 11
AB2
A
171 181Right-handed alpha
Helix 12
AB3
A
193 205Right-handed alpha
Helix 13
AB4
A
209 211Right-handed 310
Helix 14
AB5
A
228 243Right-handed alpha
Helix 15
AB6
A
250 259Right-handed alpha
Helix 16
AB7
A
274 276Right-handed 310
Helix 17
AB8
A
277 285Right-handed alpha
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There are 2 sheets in PDB entry 9JQF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
267 270parallel
Strand 4
A
163 165parallel
Strand 5
A
185 187parallel
Strand 6
A
213 215parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
77 83parallel
Strand 3
A
52 56parallel
Strand 4
A
129 130parallel
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