Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JQM entry

There are 2 chains in PDB entry 9JQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 2HIS 429
A
 ALA 2HIS 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9JQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
12 20Right-handed alpha
Helix 2
AA2
B
22 32Right-handed alpha
Helix 3
AA3
B
52 61Right-handed alpha
Helix 4
AA4
B
73 80Right-handed alpha
Helix 5
AA5
B
85 89Right-handed 310
Helix 6
AA6
B
90 104Right-handed alpha
Helix 7
AA7
B
106 131Right-handed alpha
Helix 8
AA8
B
136 153Right-handed alpha
Helix 9
AA9
B
157 159Right-handed 310
Helix 10
AB1
B
160 174Right-handed alpha
Helix 11
AB2
B
175 178Right-handed 310
Helix 12
AB3
B
184 208Right-handed alpha
Helix 13
AB4
B
217 225Right-handed alpha
Helix 14
AB5
B
234 244Right-handed alpha
Helix 15
AB6
B
246 251Right-handed alpha
Helix 16
AB7
B
252 266Right-handed alpha
Helix 17
AB8
B
266 276Right-handed alpha
Helix 18
AB9
B
276 291Right-handed alpha
Helix 19
AC1
B
321 327Right-handed alpha
Helix 20
AC2
B
339 346Right-handed 310
Helix 21
AC3
B
369 387Right-handed alpha
Helix 22
AC4
A
12 20Right-handed alpha
Helix 23
AC5
A
22 31Right-handed alpha
Helix 24
AC6
A
52 61Right-handed alpha
Helix 25
AC7
A
73 80Right-handed alpha
Helix 26
AC8
A
85 89Right-handed 310
Helix 27
AC9
A
90 104Right-handed alpha
Helix 28
AD1
A
106 131Right-handed alpha
Helix 29
AD2
A
136 152Right-handed alpha
Helix 30
AD3
A
157 173Right-handed alpha
Helix 31
AD4
A
184 208Right-handed alpha
Helix 32
AD5
A
217 225Right-handed alpha
Helix 33
AD6
A
234 244Right-handed alpha
Helix 34
AD7
A
246 266Right-handed alpha
Helix 35
AD8
A
266 276Right-handed alpha
Helix 36
AD9
A
276 291Right-handed alpha
Helix 37
AE1
A
322 327Right-handed alpha
Helix 38
AE2
A
339 345Right-handed 310
Helix 39
AE3
A
369 387Right-handed alpha
Helix 40
AE4
A
426 430Right-handed 310
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There are 6 sheets in PDB entry 9JQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 42first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
317 320parallel
Strand 4
B
297 301anti-parallel
Strand 5
B
66 67anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
413 419anti-parallel
Strand 3
B
388 391anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 307first strand
Strand 2
B
310 312anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
317 321parallel
Strand 4
A
296 301anti-parallel
Strand 5
A
66 67anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
413 419anti-parallel
Strand 3
A
388 391anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
310 312anti-parallel
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