Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JQP entry

There are 7 chains in PDB entry 9JQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3PHE 213
B
 GLN 1PHE 213
E
 GLN 1SER 211
H
 VAL 2VAL 115
I
 ASP 1LEU 109
J
 GLU 1VAL 115
K
 ASP 1ILE 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9JQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 65Right-handed 310
Helix 2
AA2
A
88 92Right-handed 310
Helix 3
AA3
B
72 75Right-handed 310
Helix 4
AA4
E
61 65Right-handed 310
Helix 5
AA5
H
28 32Right-handed 310
Helix 6
AA6
H
73 77Right-handed 310
Helix 7
AA7
J
28 32Right-handed 310
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There are 25 sheets in PDB entry 9JQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
111 115parallel
Strand 3
A
93 97anti-parallel
Strand 4
A
38 40anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
82 84anti-parallel
Strand 3
A
68 70anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
105 106anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
179 180anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
201 207anti-parallel
Strand 4
B
122 125parallel
Strand 5
B
133 142anti-parallel
Strand 6
B
173 176anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
201 207anti-parallel
Strand 4
B
122 125parallel
Strand 5
B
133 142anti-parallel
Strand 6
B
179 181anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
68 70anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
107 115parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
35 37anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 151first strand
Strand 2
B
190 195anti-parallel
Strand 3
B
200 203anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 5first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
80 84anti-parallel
Strand 4
E
69 71anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
109 115parallel
Strand 3
E
93 98anti-parallel
Strand 4
E
35 39anti-parallel
Strand 5
E
48 51anti-parallel
Strand 6
E
54 55anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 124first strand
Strand 2
E
135 140anti-parallel
Strand 3
E
174 179anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
188 194first strand
Strand 2
E
201 207anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
22 23anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
19 20first strand
Strand 2
H
81 82anti-parallel
Strand 3
H
69 70anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
33 34first strand
Strand 2
H
98 99anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
43 51anti-parallel
Strand 3
H
36 40anti-parallel
Strand 4
H
93 95anti-parallel
Strand 5
H
110 112anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
4 7first strand
Strand 2
I
22 25anti-parallel
Strand 3
I
75 77anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
50 54first strand
Strand 2
I
39 42anti-parallel
Strand 3
I
91 94anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
18 23first strand
Strand 2
J
78 83anti-parallel
Strand 3
J
68 73anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
58 60first strand
Strand 2
J
45 51anti-parallel
Strand 3
J
33 39anti-parallel
Strand 4
J
93 99anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
4 7first strand
Strand 2
K
18 25anti-parallel
Strand 3
K
75 81anti-parallel
Strand 4
K
67 72anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
10 12first strand
Strand 2
K
108 110parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
50 53first strand
Strand 2
K
38 43anti-parallel
Strand 3
K
90 91anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
50 53first strand
Strand 2
K
38 43anti-parallel
Strand 3
K
94 95anti-parallel
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