Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JQQ entry

There are 4 chains in PDB entry 9JQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1ALA 484
B
 GLN 1THR 292
E
 GLN 1VAL 493
F
 GLN 1ARG 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9JQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 60Right-handed 310
Helix 2
AA2
A
74 78Right-handed 310
Helix 3
AA3
A
209 213Right-handed 310
Helix 4
AA4
A
219 290Right-handed alpha
Helix 5
AA5
A
297 307Right-handed alpha
Helix 6
AA6
B
42 44Right-handed 310
Helix 7
AA7
B
61 65Right-handed 310
Helix 8
AA8
B
217 292Right-handed alpha
Helix 9
AA9
E
224 294Right-handed alpha
Helix 10
AB1
F
50 54Right-handed 310
Helix 11
AB2
F
88 92Right-handed 310
Helix 12
AB3
F
224 294Right-handed alpha
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There are 24 sheets in PDB entry 9JQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
68 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
104 115parallel
Strand 3
A
93 101anti-parallel
Strand 4
A
35 39anti-parallel
Strand 5
A
48 51anti-parallel
Strand 6
A
54 55anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
122 125anti-parallel
Strand 3
B
200 207parallel
Strand 4
B
189 195anti-parallel
Strand 5
B
147 151anti-parallel
Strand 6
B
157 158anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
189 192anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
B
122 129parallel
Strand 5
B
132 142anti-parallel
Strand 6
B
173 181anti-parallel
Strand 7
B
161 162anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
365 368parallel
Strand 3
A
432 436anti-parallel
Strand 4
A
441 445anti-parallel
Strand 5
A
452 455anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 320first strand
Strand 2
A
354 357anti-parallel
Strand 3
A
465 470anti-parallel
Strand 4
A
378 384anti-parallel
Strand 5
A
401 406anti-parallel
Strand 6
A
413 414anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
332 335anti-parallel
Strand 3
A
479 481anti-parallel
Strand 4
A
370 371anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
68 71anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
109 115parallel
Strand 3
B
94 98anti-parallel
Strand 4
B
36 40anti-parallel
Strand 5
B
45 50anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
19 23first strand
Strand 2
E
80 84anti-parallel
Strand 3
E
68 70anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 50first strand
Strand 2
E
35 39anti-parallel
Strand 3
E
93 100anti-parallel
Strand 4
E
105 112anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 125first strand
Strand 2
E
135 138anti-parallel
Strand 3
E
176 179anti-parallel
Strand 4
E
162 164anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
147 151first strand
Strand 2
E
188 194anti-parallel
Strand 3
E
201 207anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
313 314first strand
Strand 2
E
321 324anti-parallel
Strand 3
E
469 471anti-parallel
Strand 4
E
357 363anti-parallel
Strand 5
E
421 427anti-parallel
Strand 6
E
435 437anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
313 314first strand
Strand 2
E
321 324anti-parallel
Strand 3
E
469 471anti-parallel
Strand 4
E
357 363anti-parallel
Strand 5
E
297 299parallel
Strand 6
F
298 299anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
346 348first strand
Strand 2
E
456 461anti-parallel
Strand 3
E
371 376anti-parallel
Strand 4
E
393 397anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
488 489first strand
Strand 2
F
442 446anti-parallel
Strand 3
F
435 437anti-parallel
Strand 4
F
422 423anti-parallel
Strand 5
F
361 362anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 5first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
79 84anti-parallel
Strand 4
F
69 71anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 14first strand
Strand 2
F
110 115parallel
Strand 3
F
93 95anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
122 124first strand
Strand 2
F
133 138anti-parallel
Strand 3
F
177 181anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
147 149first strand
Strand 2
F
190 195anti-parallel
Strand 3
F
200 205anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
313 315first strand
Strand 2
F
321 324anti-parallel
Strand 3
F
469 470anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
346 348first strand
Strand 2
F
456 462anti-parallel
Strand 3
F
370 376anti-parallel
Strand 4
F
393 399anti-parallel
Strand 5
F
402 405anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
357 358first strand
Strand 2
F
426 427anti-parallel
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