Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JQR entry

There are 6 chains in PDB entry 9JQR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	ALA 484
B	GLN 1	GLY 294
D	ILE 2	GLU 206
E	GLN 1	VAL 493
F	PHE 2	ARG 492
G	GLY 2	PRO 229

There are 24 helices in PDB entry 9JQR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	78	Right-handed 310
Helix 2	AA2	A	219	291	Right-handed alpha
Helix 3	AA3	A	297	308	Right-handed alpha
Helix 4	AA4	B	57	60	Right-handed 310
Helix 5	AA5	B	61	65	Right-handed 310
Helix 6	AA6	B	74	77	Right-handed 310
Helix 7	AA7	B	209	215	Right-handed alpha
Helix 8	AA8	B	218	294	Right-handed alpha
Helix 9	AA9	D	29	31	Right-handed 310
Helix 10	AB1	D	83	87	Right-handed 310
Helix 11	AB2	D	185	189	Right-handed 310
Helix 12	AB3	D	203	205	Right-handed 310
Helix 13	AB4	E	61	65	Right-handed 310
Helix 14	AB5	E	88	92	Right-handed 310
Helix 15	AB6	E	228	296	Right-handed alpha
Helix 16	AB7	E	306	309	Right-handed 310
Helix 17	AB8	F	56	60	Right-handed 310
Helix 18	AB9	F	61	65	Right-handed 310
Helix 19	AC1	F	88	92	Right-handed 310
Helix 20	AC2	F	228	295	Right-handed alpha
Helix 21	AC3	F	305	309	Right-handed 310
Helix 22	AC4	G	88	92	Right-handed 310
Helix 23	AC5	G	140	146	Right-handed alpha
Helix 24	AC6	G	217	221	Right-handed 310

There are 40 sheets in PDB entry 9JQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	22	26	anti-parallel
Strand 3	A	80	81	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	112	115	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	48	51	anti-parallel
Strand 3	A	35	38	anti-parallel
Strand 4	A	95	101	anti-parallel
Strand 5	A	104	110	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	174	180	anti-parallel
Strand 3	A	132	140	anti-parallel
Strand 4	A	122	129	anti-parallel
Strand 5	B	200	208	parallel
Strand 6	B	189	195	anti-parallel
Strand 7	B	147	151	anti-parallel
Strand 8	B	157	158	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	151	first strand
Strand 2	A	189	195	anti-parallel
Strand 3	A	200	207	anti-parallel
Strand 4	B	122	127	parallel
Strand 5	B	133	142	anti-parallel
Strand 6	B	173	181	anti-parallel
Strand 7	B	161	162	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	151	first strand
Strand 2	A	189	195	anti-parallel
Strand 3	A	200	207	anti-parallel
Strand 4	B	122	127	parallel
Strand 5	B	133	142	anti-parallel
Strand 6	B	173	181	anti-parallel
Strand 7	B	166	167	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	365	368	parallel
Strand 3	A	432	436	anti-parallel
Strand 4	A	441	445	anti-parallel
Strand 5	A	452	455	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	320	first strand
Strand 2	A	354	357	anti-parallel
Strand 3	A	465	470	anti-parallel
Strand 4	A	378	384	anti-parallel
Strand 5	A	401	406	anti-parallel
Strand 6	A	413	414	anti-parallel
Strand 7	A	420	421	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	332	335	anti-parallel
Strand 3	A	479	480	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	68	71	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	104	115	parallel
Strand 3	B	93	101	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	64	69	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	114	117	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	33	40	anti-parallel
Strand 4	D	89	96	anti-parallel
Strand 5	D	107	109	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	134	first strand
Strand 2	D	137	145	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	D	159	162	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	134	first strand
Strand 2	D	137	145	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	D	166	169	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	155	first strand
Strand 2	D	190	195	anti-parallel
Strand 3	D	198	201	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	80	84	anti-parallel
Strand 4	E	68	71	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	109	115	parallel
Strand 3	E	93	96	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	48	51	anti-parallel
Strand 3	E	35	38	anti-parallel
Strand 4	E	99	100	anti-parallel
Strand 5	E	105	106	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	128	first strand
Strand 2	E	133	142	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	162	167	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	150	first strand
Strand 2	E	188	194	anti-parallel
Strand 3	E	201	207	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	298	first strand
Strand 2	F	298	299	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	305	first strand
Strand 2	E	346	349	anti-parallel
Strand 3	E	456	461	anti-parallel
Strand 4	E	371	376	anti-parallel
Strand 5	E	393	399	anti-parallel
Strand 6	E	402	405	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	315	first strand
Strand 2	E	322	324	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	363	first strand
Strand 2	E	421	427	anti-parallel
Strand 3	E	435	436	anti-parallel
Strand 4	E	443	445	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	80	84	anti-parallel
Strand 4	F	68	70	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	104	115	parallel
Strand 3	F	93	101	anti-parallel
Strand 4	F	35	39	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	127	first strand
Strand 2	F	134	142	anti-parallel
Strand 3	F	173	179	anti-parallel
Strand 4	F	162	164	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	149	first strand
Strand 2	F	191	194	anti-parallel
Strand 3	F	201	204	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	357	358	first strand
Strand 2	F	426	427	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	363	first strand
Strand 2	F	421	423	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	402	405	first strand
Strand 2	F	393	399	anti-parallel
Strand 3	F	369	376	anti-parallel
Strand 4	F	456	462	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	435	437	first strand
Strand 2	F	442	445	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	G	18	26	anti-parallel
Strand 3	G	79	85	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	117	122	parallel
Strand 3	G	93	102	anti-parallel
Strand 4	G	35	40	anti-parallel
Strand 5	G	47	52	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	117	122	parallel
Strand 3	G	93	102	anti-parallel
Strand 4	G	109	113	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	136	first strand
Strand 2	G	149	159	anti-parallel
Strand 3	G	195	200	anti-parallel
Strand 4	G	180	181	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	136	first strand
Strand 2	G	149	159	anti-parallel
Strand 3	G	190	193	anti-parallel
Strand 4	G	185	187	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	170	first strand
Strand 2	G	208	214	anti-parallel
Strand 3	G	223	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JQR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQR