Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JQT entry

There are 4 chains in PDB entry 9JQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 55TRP 246
B
 VAL 2VAL 215
C
 GLU 1PHE 208
D
 VAL 4VAL 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9JQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 79Right-handed 310
Helix 2
AA2
A
118 122Right-handed 310
Helix 3
AA3
B
28 32Right-handed 310
Helix 4
AA4
B
87 91Right-handed 310
Helix 5
AA5
B
160 162Right-handed 310
Helix 6
AA6
B
191 193Right-handed 310
Helix 7
AA7
B
205 208Right-handed 310
Helix 8
AA8
C
78 82Right-handed 310
Helix 9
AA9
C
120 127Right-handed alpha
Helix 10
AB1
C
182 188Right-handed alpha
Helix 11
AB2
D
30 34Right-handed 310
Helix 12
AB3
D
89 93Right-handed 310
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There are 18 sheets in PDB entry 9JQT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
111 117anti-parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
61 65anti-parallel
Strand 5
A
152 153parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
127 133anti-parallel
Strand 4
A
141 147anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 163first strand
Strand 2
A
170 175anti-parallel
Strand 3
A
207 210anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
183 190anti-parallel
Strand 3
A
219 227anti-parallel
Strand 4
A
244 246anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
111 115parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
111 115parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
106 107anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
139 149anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
168 169anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
139 149anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
173 174anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 158first strand
Strand 2
B
199 204anti-parallel
Strand 3
B
209 214anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
69 74anti-parallel
Strand 4
C
61 66anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
101 105parallel
Strand 3
C
84 89anti-parallel
Strand 4
C
33 37anti-parallel
Strand 5
C
44 48anti-parallel
Strand 6
C
52 53anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
101 105parallel
Strand 3
C
84 89anti-parallel
Strand 4
C
96 97anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 117first strand
Strand 2
C
128 138anti-parallel
Strand 3
C
172 181anti-parallel
Strand 4
C
158 162anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 154first strand
Strand 2
C
143 149anti-parallel
Strand 3
C
191 197anti-parallel
Strand 4
C
204 208anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 9first strand
Strand 2
D
20 25anti-parallel
Strand 3
D
80 85anti-parallel
Strand 4
D
71 75anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
47 53anti-parallel
Strand 3
D
35 41anti-parallel
Strand 4
D
94 101anti-parallel
Strand 5
D
110 113anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
47 53anti-parallel
Strand 3
D
35 41anti-parallel
Strand 4
D
94 101anti-parallel
Strand 5
D
117 119anti-parallel
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