Analysis of interatomic Contacts of Structural Units in PDB entry:
9JQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JQX entry

There are 2 chains in PDB entry 9JQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 36ARG 738
B
 SER 29VAL 711
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9JQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 70Right-handed alpha
Helix 2
AA2
A
90 103Right-handed alpha
Helix 3
AA3
A
115 127Right-handed alpha
Helix 4
AA4
A
128 130Right-handed 310
Helix 5
AA5
A
140 145Right-handed 310
Helix 6
AA6
A
158 161Right-handed 310
Helix 7
AA7
A
162 173Right-handed alpha
Helix 8
AA8
A
187 201Right-handed alpha
Helix 9
AA9
A
216 221Right-handed alpha
Helix 10
AB1
A
222 225Right-handed 310
Helix 11
AB2
A
236 246Right-handed alpha
Helix 12
AB3
A
282 289Right-handed alpha
Helix 13
AB4
A
313 326Right-handed alpha
Helix 14
AB5
A
327 329Right-handed 310
Helix 15
AB6
A
331 335Right-handed 310
Helix 16
AB7
A
343 366Right-handed alpha
Helix 17
AB8
A
379 392Right-handed alpha
Helix 18
AB9
A
465 490Right-handed alpha
Helix 19
AC1
A
491 494Right-handed 310
Helix 20
AC2
A
496 501Right-handed alpha
Helix 21
AC3
A
503 525Right-handed alpha
Helix 22
AC4
A
535 559Right-handed alpha
Helix 23
AC5
A
559 572Right-handed alpha
Helix 24
AC6
A
582 607Right-handed alpha
Helix 25
AC7
A
641 667Right-handed alpha
Helix 26
AC8
A
679 702Right-handed alpha
Helix 27
AC9
A
705 737Right-handed alpha
Helix 28
AD1
B
46 51Right-handed alpha
Helix 29
AD2
B
52 65Right-handed alpha
Helix 30
AD3
B
85 99Right-handed alpha
Helix 31
AD4
B
111 123Right-handed alpha
Helix 32
AD5
B
153 156Right-handed 310
Helix 33
AD6
B
157 168Right-handed alpha
Helix 34
AD7
B
180 183Right-handed 310
Helix 35
AD8
B
184 194Right-handed alpha
Helix 36
AD9
B
210 221Right-handed alpha
Helix 37
AE1
B
231 245Right-handed alpha
Helix 38
AE2
B
263 267Right-handed 310
Helix 39
AE3
B
274 283Right-handed alpha
Helix 40
AE4
B
305 318Right-handed alpha
Helix 41
AE5
B
324 346Right-handed alpha
Helix 42
AE6
B
358 370Right-handed alpha
Helix 43
AE7
B
444 471Right-handed alpha
Helix 44
AE8
B
475 480Right-handed alpha
Helix 45
AE9
B
482 505Right-handed alpha
Helix 46
AF1
B
511 513Right-handed 310
Helix 47
AF2
B
514 548Right-handed alpha
Helix 48
AF3
B
564 585Right-handed alpha
Helix 49
AF4
B
622 644Right-handed alpha
Helix 50
AF5
B
654 679Right-handed alpha
Helix 51
AF6
B
682 705Right-handed alpha
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There are 8 sheets in PDB entry 9JQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
38 43parallel
Strand 3
A
110 113parallel
Strand 4
A
132 135parallel
Strand 5
A
152 154parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 211first strand
Strand 2
A
177 182parallel
Strand 3
A
230 234parallel
Strand 4
A
258 262parallel
Strand 5
A
294 298parallel
Strand 6
A
413 419anti-parallel
Strand 7
A
424 431anti-parallel
Strand 8
A
436 439anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 397first strand
Strand 2
A
400 403anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 461first strand
Strand 2
A
628 633parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 81first strand
Strand 2
B
31 37parallel
Strand 3
B
103 107parallel
Strand 4
B
129 131parallel
Strand 5
B
147 149parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 207first strand
Strand 2
B
172 178parallel
Strand 3
B
225 229parallel
Strand 4
B
253 257parallel
Strand 5
B
286 290parallel
Strand 6
B
391 397anti-parallel
Strand 7
B
400 408anti-parallel
Strand 8
B
413 415anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 375first strand
Strand 2
B
378 381anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 593first strand
Strand 2
B
610 615anti-parallel
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