Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JR0 entry

There are 5 chains in PDB entry 9JR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 36	ARG 738
B	SER 29	THR 728
C	CYS 3	PHE 354
D	SER 2	ASN 340
E	THR 6	ARG 62

There are 66 helices in PDB entry 9JR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	70	Right-handed alpha
Helix 2	AA2	A	90	103	Right-handed alpha
Helix 3	AA3	A	115	126	Right-handed alpha
Helix 4	AA4	A	127	130	Right-handed 310
Helix 5	AA5	A	140	145	Right-handed 310
Helix 6	AA6	A	158	160	Right-handed 310
Helix 7	AA7	A	161	173	Right-handed alpha
Helix 8	AA8	A	185	203	Right-handed alpha
Helix 9	AA9	A	216	226	Right-handed alpha
Helix 10	AB1	A	236	251	Right-handed alpha
Helix 11	AB2	A	282	290	Right-handed alpha
Helix 12	AB3	A	313	320	Right-handed alpha
Helix 13	AB4	A	322	327	Right-handed alpha
Helix 14	AB5	A	343	361	Right-handed alpha
Helix 15	AB6	A	362	367	Right-handed alpha
Helix 16	AB7	A	371	375	Right-handed 310
Helix 17	AB8	A	379	393	Right-handed alpha
Helix 18	AB9	A	403	407	Right-handed 310
Helix 19	AC1	A	445	449	Right-handed 310
Helix 20	AC2	A	465	491	Right-handed alpha
Helix 21	AC3	A	496	501	Right-handed alpha
Helix 22	AC4	A	503	527	Right-handed alpha
Helix 23	AC5	A	535	570	Right-handed alpha
Helix 24	AC6	A	584	607	Right-handed alpha
Helix 25	AC7	A	641	667	Right-handed alpha
Helix 26	AC8	A	678	703	Right-handed alpha
Helix 27	AC9	A	705	738	Right-handed alpha
Helix 28	AD1	B	45	66	Right-handed alpha
Helix 29	AD2	B	85	99	Right-handed alpha
Helix 30	AD3	B	111	123	Right-handed alpha
Helix 31	AD4	B	124	126	Right-handed 310
Helix 32	AD5	B	153	156	Right-handed 310
Helix 33	AD6	B	157	168	Right-handed alpha
Helix 34	AD7	B	180	198	Right-handed alpha
Helix 35	AD8	B	210	221	Right-handed alpha
Helix 36	AD9	B	231	245	Right-handed alpha
Helix 37	AE1	B	274	283	Right-handed alpha
Helix 38	AE2	B	305	318	Right-handed alpha
Helix 39	AE3	B	324	346	Right-handed alpha
Helix 40	AE4	B	349	353	Right-handed 310
Helix 41	AE5	B	357	370	Right-handed alpha
Helix 42	AE6	B	444	472	Right-handed alpha
Helix 43	AE7	B	475	480	Right-handed alpha
Helix 44	AE8	B	482	504	Right-handed alpha
Helix 45	AE9	B	514	551	Right-handed alpha
Helix 46	AF1	B	559	585	Right-handed alpha
Helix 47	AF2	B	618	644	Right-handed alpha
Helix 48	AF3	B	649	653	Right-handed 310
Helix 49	AF4	B	654	678	Right-handed alpha
Helix 50	AF5	B	684	706	Right-handed alpha
Helix 51	AF6	B	706	712	Right-handed alpha
Helix 52	AF7	C	6	32	Right-handed alpha
Helix 53	AF8	C	50	57	Right-handed alpha
Helix 54	AF9	C	207	213	Right-handed alpha
Helix 55	AG1	C	214	216	Right-handed 310
Helix 56	AG2	C	228	232	Right-handed 310
Helix 57	AG3	C	241	255	Right-handed alpha
Helix 58	AG4	C	270	279	Right-handed alpha
Helix 59	AG5	C	280	281	Right-handed 310
Helix 60	AG6	C	282	286	Right-handed 310
Helix 61	AG7	C	295	309	Right-handed alpha
Helix 62	AG8	C	329	352	Right-handed alpha
Helix 63	AG9	D	3	26	Right-handed alpha
Helix 64	AH1	D	29	34	Right-handed alpha
Helix 65	AH2	E	7	24	Right-handed alpha
Helix 66	AH3	E	29	44	Right-handed alpha

There are 18 sheets in PDB entry 9JR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	38	41	parallel
Strand 3	A	110	113	parallel
Strand 4	A	132	135	parallel
Strand 5	A	152	154	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	212	first strand
Strand 2	A	177	183	parallel
Strand 3	A	230	234	parallel
Strand 4	A	258	262	parallel
Strand 5	A	294	298	parallel
Strand 6	A	414	420	anti-parallel
Strand 7	A	423	431	anti-parallel
Strand 8	A	436	439	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	400	402	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	461	first strand
Strand 2	A	629	638	parallel
Strand 3	A	610	615	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	81	first strand
Strand 2	B	32	37	parallel
Strand 3	B	105	108	parallel
Strand 4	B	128	131	parallel
Strand 5	B	147	149	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	207	first strand
Strand 2	B	172	178	parallel
Strand 3	B	225	229	parallel
Strand 4	B	253	257	parallel
Strand 5	B	286	290	parallel
Strand 6	B	391	397	anti-parallel
Strand 7	B	400	408	anti-parallel
Strand 8	B	413	415	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	386	387	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	439	first strand
Strand 2	B	607	609	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	591	first strand
Strand 2	B	612	615	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	190	first strand
Strand 2	C	195	200	anti-parallel
Strand 3	C	34	39	parallel
Strand 4	C	220	226	parallel
Strand 5	C	263	269	parallel
Strand 6	C	319	320	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	335	339	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	62	first strand
Strand 2	D	71	74	anti-parallel
Strand 3	D	79	81	anti-parallel
Strand 4	D	91	93	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	105	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	121	125	anti-parallel
Strand 4	D	134	138	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	156	159	anti-parallel
Strand 3	D	165	170	anti-parallel
Strand 4	D	175	181	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	220	222	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	232	first strand
Strand 2	D	243	245	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	241	first strand
Strand 2	D	250	254	anti-parallel
Strand 3	D	260	264	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	294	298	anti-parallel
Strand 4	D	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR0