Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JR1 entry

There are 16 chains in PDB entry 9JR1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 45	ASP 447
B	MET 46	MET 446
C	MET 46	GLU 448
D	HIS 44	LYS 449
F	PHE 47	MET 446
E	MET 46	ASP 447
S	UNK 6	UNK 16
T	UNK -3	UNK 15
H	UNK 2	UNK 5
G	UNK 10	UNK 19
K	UNK 3	UNK 5
L	UNK 3	UNK 5
I	UNK 1	UNK 21
J	UNK 0	UNK 2
N	UNK 5	UNK 6
O	UNK 8	UNK 9

There are 61 helices in PDB entry 9JR1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	61	Right-handed alpha
Helix 2	AA2	A	66	81	Right-handed alpha
Helix 3	AA3	A	90	98	Right-handed alpha
Helix 4	AA4	A	128	134	Right-handed alpha
Helix 5	AA5	A	153	162	Right-handed alpha
Helix 6	AA6	A	217	228	Right-handed alpha
Helix 7	AA7	A	246	256	Right-handed alpha
Helix 8	AA8	A	300	312	Right-handed alpha
Helix 9	AA9	A	420	424	Right-handed alpha
Helix 10	AB1	A	426	447	Right-handed alpha
Helix 11	AB2	B	47	61	Right-handed alpha
Helix 12	AB3	B	66	83	Right-handed alpha
Helix 13	AB4	B	90	103	Right-handed alpha
Helix 14	AB5	B	128	134	Right-handed alpha
Helix 15	AB6	B	153	162	Right-handed alpha
Helix 16	AB7	B	217	228	Right-handed alpha
Helix 17	AB8	B	246	256	Right-handed alpha
Helix 18	AB9	B	300	312	Right-handed alpha
Helix 19	AC1	B	419	424	Right-handed alpha
Helix 20	AC2	B	426	446	Right-handed alpha
Helix 21	AC3	C	48	61	Right-handed alpha
Helix 22	AC4	C	66	83	Right-handed alpha
Helix 23	AC5	C	90	96	Right-handed alpha
Helix 24	AC6	C	128	134	Right-handed alpha
Helix 25	AC7	C	153	162	Right-handed alpha
Helix 26	AC8	C	217	229	Right-handed alpha
Helix 27	AC9	C	246	256	Right-handed alpha
Helix 28	AD1	C	300	312	Right-handed alpha
Helix 29	AD2	C	419	424	Right-handed alpha
Helix 30	AD3	C	426	448	Right-handed alpha
Helix 31	AD4	D	47	61	Right-handed alpha
Helix 32	AD5	D	66	81	Right-handed alpha
Helix 33	AD6	D	90	103	Right-handed alpha
Helix 34	AD7	D	114	118	Right-handed 310
Helix 35	AD8	D	128	134	Right-handed alpha
Helix 36	AD9	D	153	162	Right-handed alpha
Helix 37	AE1	D	217	228	Right-handed alpha
Helix 38	AE2	D	246	256	Right-handed alpha
Helix 39	AE3	D	300	312	Right-handed alpha
Helix 40	AE4	D	419	424	Right-handed alpha
Helix 41	AE5	D	426	447	Right-handed alpha
Helix 42	AE6	F	48	61	Right-handed alpha
Helix 43	AE7	F	66	80	Right-handed alpha
Helix 44	AE8	F	128	134	Right-handed alpha
Helix 45	AE9	F	153	162	Right-handed alpha
Helix 46	AF1	F	217	229	Right-handed alpha
Helix 47	AF2	F	246	256	Right-handed alpha
Helix 48	AF3	F	300	312	Right-handed alpha
Helix 49	AF4	F	421	425	Right-handed 310
Helix 50	AF5	F	426	445	Right-handed alpha
Helix 51	AF6	E	47	61	Right-handed alpha
Helix 52	AF7	E	66	81	Right-handed alpha
Helix 53	AF8	E	90	98	Right-handed alpha
Helix 54	AF9	E	128	134	Right-handed alpha
Helix 55	AG1	E	153	162	Right-handed alpha
Helix 56	AG2	E	217	228	Right-handed alpha
Helix 57	AG3	E	246	256	Right-handed alpha
Helix 58	AG4	E	300	312	Right-handed alpha
Helix 59	AG5	E	381	385	Right-handed 310
Helix 60	AG6	E	419	424	Right-handed alpha
Helix 61	AG7	E	426	446	Right-handed alpha

There are 30 sheets in PDB entry 9JR1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	339	348	anti-parallel
Strand 3	A	262	267	anti-parallel
Strand 4	A	275	278	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	339	348	anti-parallel
Strand 3	A	327	333	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	115	first strand
Strand 2	A	118	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	140	144	anti-parallel
Strand 3	A	168	174	anti-parallel
Strand 4	A	182	187	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	207	211	anti-parallel
Strand 3	A	235	238	parallel
Strand 4	A	290	294	parallel
Strand 5	A	316	319	parallel
Strand 6	A	364	365	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	339	348	anti-parallel
Strand 3	B	262	267	anti-parallel
Strand 4	B	275	278	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	339	348	anti-parallel
Strand 3	B	327	333	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	189	192	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	115	first strand
Strand 2	B	118	124	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	140	144	anti-parallel
Strand 3	B	168	174	anti-parallel
Strand 4	B	182	187	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	207	211	anti-parallel
Strand 3	B	235	238	parallel
Strand 4	B	290	294	parallel
Strand 5	B	316	319	parallel
Strand 6	B	364	365	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	339	348	anti-parallel
Strand 3	C	262	267	anti-parallel
Strand 4	C	275	278	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	339	348	anti-parallel
Strand 3	C	327	333	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	115	first strand
Strand 2	C	118	124	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	140	144	anti-parallel
Strand 3	C	168	174	anti-parallel
Strand 4	C	182	187	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	316	319	parallel
Strand 3	C	290	294	parallel
Strand 4	C	235	238	parallel
Strand 5	C	207	211	parallel
Strand 6	C	196	201	anti-parallel
Strand 7	C	417	418	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	339	348	anti-parallel
Strand 3	D	262	267	anti-parallel
Strand 4	D	276	278	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	339	348	anti-parallel
Strand 3	D	327	333	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	113	first strand
Strand 2	D	120	124	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	143	first strand
Strand 2	D	168	174	anti-parallel
Strand 3	D	182	187	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	200	first strand
Strand 2	D	207	211	anti-parallel
Strand 3	D	235	238	parallel
Strand 4	D	290	294	parallel
Strand 5	D	316	319	parallel
Strand 6	D	364	365	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	113	first strand
Strand 2	F	120	124	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	148	first strand
Strand 2	F	140	144	anti-parallel
Strand 3	F	168	175	anti-parallel
Strand 4	F	178	187	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	196	200	first strand
Strand 2	F	207	211	anti-parallel
Strand 3	F	235	238	parallel
Strand 4	F	290	294	parallel
Strand 5	F	316	319	parallel
Strand 6	F	364	365	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	278	first strand
Strand 2	F	262	267	anti-parallel
Strand 3	F	340	348	anti-parallel
Strand 4	F	327	332	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	338	348	anti-parallel
Strand 3	E	262	267	anti-parallel
Strand 4	E	275	278	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	338	348	anti-parallel
Strand 3	E	327	334	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	115	first strand
Strand 2	E	118	124	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	140	144	anti-parallel
Strand 3	E	168	174	anti-parallel
Strand 4	E	182	187	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	200	first strand
Strand 2	E	207	211	anti-parallel
Strand 3	E	235	238	parallel
Strand 4	E	290	294	parallel
Strand 5	E	316	319	parallel
Strand 6	E	364	365	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JR1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR1