Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JR2 entry

There are 6 chains in PDB entry 9JR2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	VAL 246
B	LEU 4	ASN 340
G	GLN 11	PHE 61
S	VAL 2	LEU 235
P	SER 1	PHE 34
R	MET 32	PHE 483

There are 34 helices in PDB entry 9JR2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	31	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	96	101	Right-handed 310
Helix 4	AA4	A	117	130	Right-handed alpha
Helix 5	AA5	A	131	135	Right-handed 310
Helix 6	AA6	A	145	156	Right-handed alpha
Helix 7	AA7	A	159	164	Right-handed alpha
Helix 8	AA8	A	165	170	Right-handed 310
Helix 9	AA9	A	183	202	Right-handed alpha
Helix 10	AB1	A	223	243	Right-handed alpha
Helix 11	AB2	B	5	25	Right-handed alpha
Helix 12	AB3	B	29	34	Right-handed alpha
Helix 13	AB4	B	128	132	Right-handed 310
Helix 14	AB5	G	12	24	Right-handed alpha
Helix 15	AB6	G	29	44	Right-handed alpha
Helix 16	AB7	G	45	48	Right-handed 310
Helix 17	AB8	S	28	32	Right-handed 310
Helix 18	AB9	S	53	56	Right-handed 310
Helix 19	AC1	S	87	91	Right-handed 310
Helix 20	AC2	P	2	34	Right-handed alpha
Helix 21	AC3	R	33	54	Right-handed alpha
Helix 22	AC4	R	168	172	Right-handed 310
Helix 23	AC5	R	178	212	Right-handed alpha
Helix 24	AC6	R	213	216	Right-handed 310
Helix 25	AC7	R	217	245	Right-handed alpha
Helix 26	AC8	R	279	312	Right-handed alpha
Helix 27	AC9	R	317	347	Right-handed alpha
Helix 28	AD1	R	360	391	Right-handed alpha
Helix 29	AD2	R	400	413	Right-handed alpha
Helix 30	AD3	R	413	418	Right-handed alpha
Helix 31	AD4	R	419	423	Right-handed 310
Helix 32	AD5	R	434	448	Right-handed alpha
Helix 33	AD6	R	450	459	Right-handed alpha
Helix 34	AD7	R	463	482	Right-handed alpha

There are 15 sheets in PDB entry 9JR2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	79	85	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	105	111	parallel
Strand 5	A	139	144	parallel
Strand 6	A	211	215	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	304	308	parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	284	289	anti-parallel
Strand 5	B	273	278	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	18	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	69	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	129	first strand
Strand 2	S	148	149	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	214	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	174	178	anti-parallel
Strand 6	S	182	183	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	143	146	first strand
Strand 2	S	199	204	anti-parallel
Strand 3	S	191	196	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	111	112	first strand
Strand 2	R	117	118	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	127	130	first strand
Strand 2	R	143	148	anti-parallel
Strand 3	R	163	166	anti-parallel
Strand 4	R	155	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JR2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR2