Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JR3 entry

There are 6 chains in PDB entry 9JR3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	VAL 31	PHE 483
P	SER 1	PHE 34
A	VAL 5	VAL 246
B	LEU 4	ASN 340
G	GLN 11	PHE 61
S	VAL 2	LEU 235

There are 31 helices in PDB entry 9JR3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	33	54	Right-handed alpha
Helix 2	AA2	R	176	212	Right-handed alpha
Helix 3	AA3	R	213	216	Right-handed 310
Helix 4	AA4	R	217	245	Right-handed alpha
Helix 5	AA5	R	279	312	Right-handed alpha
Helix 6	AA6	R	317	347	Right-handed alpha
Helix 7	AA7	R	360	391	Right-handed alpha
Helix 8	AA8	R	400	418	Right-handed alpha
Helix 9	AA9	R	419	423	Right-handed 310
Helix 10	AB1	R	434	450	Right-handed alpha
Helix 11	AB2	R	450	459	Right-handed alpha
Helix 12	AB3	R	463	482	Right-handed alpha
Helix 13	AB4	P	2	17	Right-handed alpha
Helix 14	AB5	P	17	34	Right-handed alpha
Helix 15	AB6	A	6	31	Right-handed alpha
Helix 16	AB7	A	96	101	Right-handed 310
Helix 17	AB8	A	117	130	Right-handed alpha
Helix 18	AB9	A	131	135	Right-handed 310
Helix 19	AC1	A	145	156	Right-handed alpha
Helix 20	AC2	A	159	164	Right-handed alpha
Helix 21	AC3	A	165	170	Right-handed 310
Helix 22	AC4	A	183	202	Right-handed alpha
Helix 23	AC5	A	223	243	Right-handed alpha
Helix 24	AC6	B	5	25	Right-handed alpha
Helix 25	AC7	B	29	34	Right-handed alpha
Helix 26	AC8	B	128	132	Right-handed 310
Helix 27	AC9	G	12	24	Right-handed alpha
Helix 28	AD1	G	29	44	Right-handed alpha
Helix 29	AD2	G	45	48	Right-handed 310
Helix 30	AD3	S	28	32	Right-handed 310
Helix 31	AD4	S	53	56	Right-handed 310

There are 15 sheets in PDB entry 9JR3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	111	112	first strand
Strand 2	R	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	126	130	first strand
Strand 2	R	143	147	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	79	85	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	105	111	parallel
Strand 5	A	139	144	parallel
Strand 6	A	214	215	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	18	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	129	first strand
Strand 2	S	148	149	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	135	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	214	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	174	178	anti-parallel
Strand 6	S	182	183	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	143	146	first strand
Strand 2	S	199	204	anti-parallel
Strand 3	S	191	196	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JR3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR3